New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3075225	47 (0.730)	3 (0.050)	3/246	NT	6.0%	intergenic (+120/+105)	PP_2684/PP_2685	membrane protein/hypothetical protein
	?	NC_002947	= 3075274	48 (0.770)					intergenic (+169/+56)	PP_2684/PP_2685	membrane protein/hypothetical protein

GCGCCGCGAAGCGGCGCTCGCGGTTACGCGTTTGCCTGCACGCTGCGCCCTTTTGCCAGATAGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3075126‑3075225 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgCTCCCACAGGTACTGTGCAAGCCTTGAAGGCTGTGATGTCCTGTGGGAACGGGGGGCAGCATGGTGCCGGAAGATGAGTTCAATGCCTATCTGGCAAAAGGGCGCAGCGTGCAGGCAAACGCGTAACCGCGAGCGCCGCTTCGCG  <  NC_002947/3075274‑3075130                                                                                                                                                                                                                                                       GCGCCGCGAAGCGGCGCTCGCGGTTACGCGTGTGCCTGCACGCTGCGCCCTTTTGCCAGATAGGCATTGAACTCATCTTCCGGCACCATGCAGCCCCCCGCTCCCACAGGTACTGTGCAAGCCTTGAAGGCTGTGATGTCCTGTGGGAA                                                                                                  <  7:290245/149‑1                              GTTTGCCTGCACGCTGCGCCCTTTTGCCAGATAGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCGCTCCCACAGGTACTGTGCAAGCCTTGAAGGCTGTGATGTCCTGTGGGAACGG                                                                                               <  7:232487/123‑1                              GTTTGCCTGCACGCTGCGCCCTTTTGCCAGATAGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCGCTCCCACAGGTACTGTGCAAGCCTTGAAGGCTGTGATGTCCTGTGGGAACGG                                                                                               >  8:232487/1‑123                                                                                                 CCCGCTCCCACAGGTACTGTGCAAGCCTTGAAGGCTGTGATGTCCTGTGGGAACGGGGGGCAGCATGGTGCCGGAAGATGAGTTCAATGCCTATCTGGCAAAAGGGCGCAGCGTGCAGGCAAACGCGTAACCGCGAGCGCCGCTTCGCG  >  3:290130/1‑149                                                                                                                                                                                                                                                       GCGCCGCGAAGCGGCGCTCGCGGTTACGCGTTTGCCTGCACGCTGCGCCCTTTTGCCAGATAGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3075126‑3075225 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgCTCCCACAGGTACTGTGCAAGCCTTGAAGGCTGTGATGTCCTGTGGGAACGGGGGGCAGCATGGTGCCGGAAGATGAGTTCAATGCCTATCTGGCAAAAGGGCGCAGCGTGCAGGCAAACGCGTAACCGCGAGCGCCGCTTCGCG  <  NC_002947/3075274‑3075130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.