| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3075225 | 47 (0.730) | 3 (0.050) | 3/246 | NT | 6.0% | intergenic (+120/+105) | PP_2684/PP_2685 | membrane protein/hypothetical protein |
| ? | NC_002947 | = 3075274 | 48 (0.770) | intergenic (+169/+56) | PP_2684/PP_2685 | membrane protein/hypothetical protein | |||||
CGCGAAGCGGCGCTCGCGGTTACGCGTTTGCCTGCACGCTGCGCCCTTTTGCCAGATAGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCACTGCCTGCGAATCTGTTGATAATAGGCATCGTC > NC_002947/3075130‑3075419 | cgcgAAGCGGCGCTCGCGGTTACGCGTTTGCCTGCACGCTGCGCCCTTTTGCCAGATAGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGcggg > 3:290130‑M2/1‑145 (MQ=255) aaGCGGCGCTCGCGGTTACGCGTTTGCCTGCACGCTGCGCCCTTTTGCCAGATAGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAg > 1:249155/1‑149 (MQ=255) aGCGGCGCTCGCGGTTACGCGTTTGCCTGCACGCTGCGCCCTTTTGCCAGATAGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGc < 2:249155/149‑1 (MQ=255) gcgcTCGCGGTTACGCGTTTGCCTGCACGCTGCGCCCTTTTGCCAGATAGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCcgc < 7:66300/149‑1 (MQ=255) gcTCGCGGTTACGCGTTTGCCTGCACGCTGCGCCCTTTTGCCAGATAGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCcgcg > 6:192360/1‑148 (MQ=255) gcgGTTACGCGTTTGCCTGCACGCTGCGCCCTTTTGCCAGATAGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAgg < 8:54215/149‑1 (MQ=255) ttACGCGTTTGCCTGCACGCTGCGCCCTTTTGCCAGATAGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCg < 1:399280/149‑1 (MQ=255) cgTTTGCCTGCACGCTGCGCCCTTTTGCCAGATAGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACa < 5:237212/149‑1 (MQ=255) cACGCTGCGCCCTTTTGCCAGATAGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGAt < 5:192360/149‑1 (MQ=255) aCGCTGCGCCCTTTTGCCAGATAGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATc < 2:360436/149‑1 (MQ=255) cGCTGAGCCCTTTTTCCAGATAGGCATTGATCTCATCTTCCGTCACCATGGTGCCCCCCGTTCCGACAGGACATCACTGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCGGCGAAAGGGCCGGTACAGGCAAAGGATCt < 4:184356/149‑1 (MQ=38) ttttGCCAGATAGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTg > 5:310987/1‑149 (MQ=255) aGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGc < 5:186676/139‑1 (MQ=255) aGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGc > 6:186676/1‑139 (MQ=255) aGGCATTGAACTCATCTTCCGACACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGc > 3:166136/1‑148 (MQ=255) ttGAACTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAg > 3:60196/1‑149 (MQ=255) ttGAACTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAg > 3:353610/1‑149 (MQ=255) aaCTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCg < 8:277312/126‑1 (MQ=255) aaCTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCg > 7:277312/1‑126 (MQ=255) tCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGgcggcg > 3:137640/1‑149 (MQ=255) tCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGgcggcg > 2:69210/1‑149 (MQ=255) cTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTgg > 5:242133/1‑149 (MQ=255) tCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTgg > 2:48407/1‑147 (MQ=255) ccGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTgg < 4:137640/146‑1 (MQ=255) ggCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGc < 3:262545/119‑1 (MQ=255) ggCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGc > 4:262545/1‑119 (MQ=255) ctgcCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCcagca < 3:312506/149‑1 (MQ=255) ccccccGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAggg > 6:73134/1‑149 (MQ=255) cccGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGt < 1:277237/100‑1 (MQ=255) cccGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGt > 2:277237/1‑100 (MQ=255) cccGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGttt > 1:197880/1‑149 (MQ=255) ccGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGcggggggcagcatggtgccggaagatgagttcaatgcctatctggcaaaagggcgcagcgtgcaggcaaac > 8:232487‑M2/1‑52 (MQ=255) ccGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGcggggggcagcatggtgccggaagatgagttcaatgcctatctggcaaaagggcgcagcgtgcaggcaaac < 7:232487‑M2/123‑72 (MQ=255) ttCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGcggggggctgcatggtgccggaagatgagttcaatgcctatctggcaaaagggcgcagcgtgcaggcacacgcgtaaccgcgagcgccgcttcgcggcgc < 7:290245‑M2/149‑101 (MQ=255) ccACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAAcc < 4:166136/149‑1 (MQ=255) ccACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAAcc > 8:340303/1‑149 (MQ=255) cacaGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCcag < 2:240331/133‑1 (MQ=255) cacaGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCcag > 1:240331/1‑133 (MQ=255) acaGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGt > 5:335098/1‑149 (MQ=255) caGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTc > 7:105044/1‑149 (MQ=255) gACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCt < 5:73134/149‑1 (MQ=255) tCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCAc > 8:334145/1‑149 (MQ=255) aGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCActgcc < 8:105044/149‑1 (MQ=255) ttCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCActgcctgc > 2:34328/1‑148 (MQ=255) cAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCACTGCCTGCGaa > 4:306827/1‑149 (MQ=255) ggCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCACTGCCTGCGAATCt < 7:334145/149‑1 (MQ=255) ggCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCACTGCCTGCGAATCt > 5:342357/1‑149 (MQ=255) gCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCACTGCCTGCGAATCTGtt < 6:342357/147‑1 (MQ=255) gCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCACTGCCTGCGAATCTGtt < 6:242133/147‑1 (MQ=255) gCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCACTGCCTGCGAATCTGTTg < 1:69210/148‑1 (MQ=255) gCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTCCAAACCGTCGCTCCACTGCCTGCGAATCTGtt < 1:48407/147‑1 (MQ=255) cacaGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCACTGCCTGCGAATCTGTTGat < 6:335098/149‑1 (MQ=255) tccTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCACTGCCTGCGAATCTGTTGATAATAg < 7:187023/147‑1 (MQ=255) cTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCACTGCCTGCGAATCTGTTGATAATAGGCa > 5:97497/1‑149 (MQ=255) cctttcgCGGGCTTGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCACTGCCTGCGa < 6:370494/123‑1 (MQ=255) cctttcgCGGGCTTGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCACTGCCTGCGa > 5:370494/7‑129 (MQ=255) ggAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCACTGCCTGCGAATCTGTTGATAATAGGCAtcgtc < 2:197880/149‑1 (MQ=255) aGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCActgcctg < 7:209332/121‑1 (MQ=255) aGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCActgcctg > 8:209332/1‑121 (MQ=255) | CGCGAAGCGGCGCTCGCGGTTACGCGTTTGCCTGCACGCTGCGCCCTTTTGCCAGATAGGCATTGAACTCATCTTCCGGCACCATGCTGCCCCCCGTTCCCACAGGACATCACAGCCTTCAAGGCTTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAAAGGGCCGGTACAGGCAAAGGATCTGACCCGTTTGCTCATTCAGCCATAAGGCGGCGCTGGCAGTTCGGCCAGCAGGGTTTTCAAACCGTCGCTCCACTGCCTGCGAATCTGTTGATAATAGGCATCGTC > NC_002947/3075130‑3075419 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |