New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3174829 =	57 (0.890)	4 (0.070)	4/236	NT	7.9%	coding (130/2610 nt)	PP_2787	transporter
	?	NC_002947	3174928 =	40 (0.670)					coding (229/2610 nt)	PP_2787	transporter

AACTGGCGTATGGCCTGGGACAGCTCGAACTGGGCGTTCAGCGACGTGGTGTTGAAGACACTCACGGGGTTGTTCAGCGCCACCATGACCGAGTCATAGGTGCCGGTGAACTCGCGCTGCAGATCAATGATCGTCTTGCGCGCCGGGTGAGTGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3174983‑3174829 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgagtgtcTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAGGGTTTGCTGGTGCAG  >  NC_002947/3174928‑3175074                                                                                                                                                                                                                                                                                                                AACTGGCGTATGGCCTGGGACAGCTCGAACTGGGCGTTCAGCGACGTGGTGTTGAAGACACTCACGGGGTTGTTCAGCGCCACCATGACCGAGTCATAGGTGCCGGTGAACTCGCGCTGCAGATCAATGATCGTCTTGCGCGCCGGGT                                                                                                                                                            <  6:81569/148‑1  ACTGGCGTATGGCCTGGGACAGCTCGAACTGTGCGTTCAGCGACGTGGTGTTGAAGACACTCACGGGGGTGTTCAGCGCCACCATGACCGAGTCATAGGTGCCGGTGAACTCGCGCTGCAGATCAATGATCGTCTTGCGCGCCGGGTGA                                                                                                                                                          <  3:385543/149‑1  ACTGGCGTATGGCCTGGGACAGCTCGAACTGGGCGTTCAGCTACGTGGTGTTGAAGACACTCACGGGGTTGTTCAGCGCCACCATGACCGAGTCATAGGTGCCGGTGAACTCGCGCTGCAGATCAATGATCGTCTTGCGCGCCGGGTGA                                                                                                                                                          <  3:217027/149‑1  ACTGGCGTATGGCCTGGGACAGCTCGAACTGGGCGTTCAGCGACGTGGTGTTGAAGACACTCACGGGGTTGTTCAGCGCCACCATGACTGAGTCATAGGTGCCGGTGAACTCGCGCTGCAGATCAATGATCGTCTTGCGCGCCGGGT                                                                                                                                                            >  5:235021/1‑147  ACTGGCGTATGGCCTGGGACAGCTCGAACTGGGCGTTCAGCGACGTGGTGTTGAAGACACTCACGGGGTTGTTCAGCGCCACCATGACCGAGTCATAGGTGCCGGTGAACTCGCGCTGCAGATCAATGATCGTCTTGCGCGCCGGGT                                                                                                                                                            >  3:110121/1‑147  ACTGGCGTATGGCCTGGGACAGCTCGAACTGGGCGTTCAGCGACGTGGTGTTGAAGACACTCACGGGGTTGTTCAGCGCCACCATGACCGAGTCATAGGTGCCGGTGAACTCGCGCTGCAGATCAATGATCGTCTTGCGCGCCGGGT                                                                                                                                                            >  4:356128/1‑147          ATGGCCTGGGACAGCTCGAACTGGGCGTTCAGCGACGTGGTGTTGAAGACACTCACGGGGTTGTTCAGCGCCACCATGACCGAGTCATAGGTGCCGGTGAACTCGCGCTGCAGATCAATGATCGTCTTGCGCGCCGGGT                                                                                                                                                            <  2:24098/139‑1          ATGGCCTGGGACAGCTCGAACTGGGCGTTCAGCGACGTGGTGTTGAAGACACTCACGGGGTTGTTCAGCGCCACCATGACCGAGTCATAGGTGCCGGTGAACTCGCGCTGCAGATCAATGATCGTCTTGCGCGCCGGGT                                                                                                                                                            >  1:24098/1‑139                        CTCGAACTGGGCGTTCAGCGACGTGGTGTTGAAGACACTCACGGGGTTGTTCAGCGCCACCATGACCGAGTCATAGGTGCCGGTGAACTCGCGCTGCAGATCAATGATCGTCTTGCGCGCCGGG                                                                                                                                                             >  5:308043/1‑124                        CTCGAACTGGGCGTTCAGCGACGTGGTGTTGAAGACACTCACGGGGTTGTTCAGCGCCACCATGACCGAGTCATAGGTGCCGGTGAACTCGCGCTGCAGATCAATGATCGTCTTGCGCGCCGGG                                                                                                                                                             <  6:308043/124‑1                                                      GAAGACACTCACGGGGTTGTTCAGCGCCACCATGACCGAGTCATAGGTGCCGGTGAACTCGCGCTGCAGATCAATGATCGTCTTGCGCGCCGGGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCA                                                                                                       >  3:398750/1‑148                                                                ACGGGGTTGTTCAGCGCCACCATGACCGAGTCATAGGTGCCGGTGAACTCGCGCTGCAGATCAATGATCGTCTTGCGCGCCGGGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGT                                                                                                                         >  2:375731/1‑120                                                                ACGGGGTTGTTCAGCGCCACCATGACCGAGTCATAGGTGCCGGTGAACTCGCGCTGCAGATCAATGATCGTCTTGCGCGCCGGGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGT                                                                                                                         <  1:375731/120‑1                                                                                                ATAGGTGCCGGTGAACTCGCGCTGCAGATCAATGATCGTCTTGCGCGCCGGGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAAC                                                             <  4:398750/148‑1                                                                                                                                                      AGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAGGGTTTGCTGGT      <  5:74204/149‑1                                                                                                                                                        TGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGC                                            >  2:343069/1‑109                                                                                                                                                        TGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGC                                            <  1:343069/109‑1                                                                                                                                                         GTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAGGGTTTGCTGGTG     >  2:2707/1‑147                                                                                                                                                          TCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAGGGTTTGCTGGTGCAG  <  2:44397/149‑1                                                                                                                                                                                                                                                                                                                AACTGGCGTATGGCCTGGGACAGCTCGAACTGGGCGTTCAGCGACGTGGTGTTGAAGACACTCACGGGGTTGTTCAGCGCCACCATGACCGAGTCATAGGTGCCGGTGAACTCGCGCTGCAGATCAATGATCGTCTTGCGCGCCGGGTGAGTGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3174983‑3174829 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgagtgtcTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAGGGTTTGCTGGTGCAG  >  NC_002947/3174928‑3175074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.