| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3174829 = | 57 (0.890) | 4 (0.070) | 4/236 | NT | 7.9% | coding (130/2610 nt) | PP_2787 | transporter |
| ? | NC_002947 | 3174928 = | 40 (0.670) | coding (229/2610 nt) | PP_2787 | transporter | |||||
CTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAGGGTTTGCTGGTGCAG > NC_002947/3174780‑3175074 | cTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCt > 4:110121/1‑149 (MQ=255) tggcctgggacagctcgaactgggcgttcagcgacgtggtgttgaaGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTc > 3:398750‑M1/47‑148 (MQ=255) gacgcTCGGCTCGCTGATGTCGGACTCCAATCCGTATCTGCTCAAGGACAGTCACCCGGCGCGCAAGACGATGATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTc < 8:86386/144‑1 (MQ=255) gTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACg > 7:107401/1‑149 (MQ=255) tCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGt < 3:378584/139‑1 (MQ=255) tCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGt > 4:378584/1‑139 (MQ=255) ccAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTc > 4:393918/1‑149 (MQ=255) cAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCATGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTc > 3:14725/1‑148 (MQ=255) cAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGc < 8:292824/134‑1 (MQ=255) cAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTc > 4:322354/1‑148 (MQ=255) cAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGAAGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGc > 7:292824/1‑134 (MQ=255) aaTCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGa < 2:310958/149‑1 (MQ=255) tCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGc > 5:392174/1‑149 (MQ=255) tCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTcc < 6:392174/148‑1 (MQ=255) gCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAgg > 4:80052/1‑149 (MQ=255) cTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGc > 3:360539/1‑149 (MQ=255) gaagacactcacggggttgttcagcgccaccatgaccgagtcataggtgccggtgaactcgcgctgcagatcaatgatcgtcttgcgcgccgggtgagtgtcTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCa > 3:398750‑M2/103‑148 (MQ=255) ggACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGcc < 5:175839/145‑1 (MQ=255) ggACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGcc > 6:175839/1‑145 (MQ=255) ggACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATAc > 4:141769/1‑149 (MQ=255) TCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACACCCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCACAGTTCGAGCTGTCCCAGGCCATACGCCAGt < 3:385543‑M1/149‑1 (MQ=255) TCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTAGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGt < 3:217027‑M1/149‑1 (MQ=255) acggggttgttcagcgccaccatgaccgagtcataggtgccggtgaactcgcgctgcagatcaatgatcgtcttgcgcgccgggtgagtgtcTTCAACACCACGTCGCTGAACGCCCAGt > 2:375731‑M2/93‑120 (MQ=255) acggggttgttcagcgccaccatgaccgagtcataggtgccggtgaactcgcgctgcagatcaatgatcgtcttgcgcgccgggtgagtgtcTTCAACACCACGTCGCTGAACGCCCAGt < 1:375731‑M2/28‑1 (MQ=255) ACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCAt > 1:24098‑M1/1‑139 (MQ=255) ACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCAt < 2:24098‑M1/139‑1 (MQ=255) ACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGtt < 6:81569‑M1/148‑1 (MQ=255) ACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGt > 4:356128‑M1/1‑147 (MQ=255) ACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGt > 3:110121‑M1/1‑147 (MQ=255) ACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCAGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGt > 5:235021‑M1/1‑147 (MQ=255) CCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAg < 6:308043‑M1/124‑1 (MQ=255) CCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAg > 5:308043‑M1/1‑124 (MQ=255) ccGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGAt > 8:136690/1‑149 (MQ=255) cAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCg > 1:268015/1‑148 (MQ=255) aaGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGaa < 3:141769/149‑1 (MQ=255) aGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAAc < 8:107401/149‑1 (MQ=255) aGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAAc < 3:393918/149‑1 (MQ=255) cGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGAt < 3:80052/149‑1 (MQ=255) gATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGAt > 6:74204/1‑148 (MQ=255) gATCATTGATATGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATg < 7:136690/149‑1 (MQ=255) cATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTgg > 5:389693/1‑137 (MQ=255) cATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTgg < 6:389693/137‑1 (MQ=255) ataggtgccggtgaactcgcgctgcagatcaatgatcgtcttgcgcgccgggtgagtgtcTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAAc < 4:398750‑M2/88‑1 (MQ=255) aGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAg < 4:14725/149‑1 (MQ=255) aCCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGc < 1:256728/116‑1 (MQ=255) aCCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCACGCCATACGCCAGTTGATGCTGGc > 2:256728/1‑116 (MQ=255) ccGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCAtc < 5:400793/149‑1 (MQ=255) cGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTc < 7:155934/133‑1 (MQ=255) cGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTc > 8:155934/1‑133 (MQ=255) tGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTg < 5:81569/148‑1 (MQ=255) cTCGGTCATGGTGGCGCTGAACAACCCCGTGTGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCTAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGcac < 8:183201/148‑1 (MQ=255) ggTCATGGTGGCGCTGAACAAGCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGcaca < 4:217027/146‑1 (MQ=255) ggTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTg < 3:214913/149‑1 (MQ=255) agcccctgtggCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTg < 6:284279/142‑1 (MQ=255) tggtggCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTgacgac > 2:367955/1‑149 (MQ=255) ggCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCt > 6:237699/1‑148 (MQ=255) aacaacCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGcc > 1:44397/1‑147 (MQ=255) agtgtcTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAGGGTTTGCTGGt < 5:74204‑M2/143‑1 (MQ=255) tgtcTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGc < 1:343069‑M2/105‑1 (MQ=255) tgtcTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGc > 2:343069‑M2/5‑109 (MQ=255) gtcTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAGGGTTTGCTGGTg > 2:2707‑M2/4‑147 (MQ=255) tcTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAGGGTTTGCTGGTGCAg < 2:44397‑M2/147‑1 (MQ=255) | CTACACCCTCGGCGCGCTGATGTCGGACACCAATCCGTATCTGCTCAAGGACACTCACCCGGCGCGCAAGACGATCATTGATCTGCAGCGCGAGTTCACCGGCACCTATGACTCGGTCATGGTGGCGCTGAACAACCCCGTGAGTGTCTTCAACACCACGTCGCTGAACGCCCAGTTCGAGCTGTCCCAGGCCATACGCCAGTTGATGCTGGCGAACGATGAGGACCGTGTCGAACTGCAGCGCATCGTCGGCCTGCACAGTGACGACCCTGATGCCCAGGGTTTGCTGGTGCAG > NC_002947/3174780‑3175074 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |