New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3465811	60 (0.940)	4 (0.060)	4/246	NT	6.1%	intergenic (‑17/+230)	aroF‑II/PP_mr39	tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase/P15 ncRNA
	?	NC_002947	= 3465839	66 (1.070)					intergenic (‑45/+202)	aroF‑II/PP_mr39	tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase/P15 ncRNA

GACTTGCTGGGCCAGTTCGCTGGGCAGTGGCATCTGCTGCTTGAGCAGGTGCGGGCTGGGCAGGCGTCTGCTGACAGTGGTGTTGGCCGCTTGCGGCTGGGTCAGGGGCAGGGCGAGGCTGGAAGCGTGCATGGCGTTTTTCCCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3465663‑3465811 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcCGACCATGCGGGCTTGAACCCGCTGTCCGCCCAGGGAAAAACGCCATGCACGCTTCCAGCCTCGCCCTGCCCCTGACCCAGCCGCAAGCGGCCAACACCACTGTCAGCAGACGCCTGCCCAGCCCGCACCTGCTCAAGCAGCAGAT  <  NC_002947/3465839‑3465694                                                                                                                                                                                                                                                                                                         GACTTGCTGGGCCAGTTCGCTGGGCAGTGGCATCTGCTGCTTGAGCAGGTGCGGGCTGGGCAGGCGTCTGCTGACAGTGGTGTTGGCCGCTTGCGGCTGGGTCAGGGGCAGGGCGAGGCTGGAAGCGTGCATGGCGTTTTTCCCTGGGC                                                                                                                                                    <  7:117759/149‑1                                     CTGCTTGAGCAGGTGCGGGCTGGGCAGGCGTCTGCTGACAGTGGTGTTGGCCGCTTGCGGCTGGGTCAGGGGCAGGGCGAGGCTGGAAGCGTGCATGGCGTTTTTCCCTGGGCCGACCATGCGGGCTTGAACCCGCTGTCCGCCCAGG                                                                                                                 <  7:306281/148‑1                                     CTGCTTGAGCAGGTGCGGGCTGGGCAGGCGTCTGCTGACAGTGGTGTTGGCCGCTTGCGGCTGGGTCAGGGGCAGGGCGAGGCTGGAAGCGTGCATGGCGTTTTTCCCTGGGCCGACCATGCGGGCTTGAACCCGCTGTCCGCCC                                                                                                                    <  5:112135/145‑1                                                    CGGGCTGGGCAGGCGTCTGCTGACAGTGGTGTTGGCCGCTTGCGGCTGGGTCAGGGGCAGGGCGAGGCTGGAAGCGTGCATGGCGTTTTTCCCTGGGCCGACCATGCGGGCTTGAACCCGCTGTCCGCCCAGGGAAAAACGCC                                                                                                       <  5:186164/143‑1                                                    CGGGCTGGGCAGGCGTCTGCTGACAGTGGTGTTGGCCGCTTGCGGCTGGGTCAGGGGCAGGGCGAGGCTGGAAGCGTGCATGGCGTTTTTCCCTGGGCCGACCATGCGGGCTTGAACCCGCTGTCCGCCCAGGGAAAAACGCC                                                                                                       >  6:186164/1‑143                                                                                                                                                  GGGCCGACCATGCGGGCTTGAACCCGCTGTCCGCCCAGGGAAAAACGCCATGCACGCTTCCAGCCTCGCCCTGCCCCTGACCCAGCCGCAAGCGGCCAACACCACTGTCAGCAGACGCCTGCCCAGCCCGCACCTGCTCAAGCAGCAGA   <  3:126261/149‑1                                                                                                                                                  GGGCCGACCATGCGGGCTTGAACCCGCTGTCCGCCCAGGGAAAAACGCCATGCACGCTTCCAGCCTCGCCCTGCCCCTGACCCAGCCGCAAGCGGCCAACACCACTGTCAGCAGACGCCTGCCCAGCC                        >  1:411449/1‑128                                                                                                                                                  GGGCCGACCATGCGGGCTTGAACCCGCTGTCCGCCCAGGGAAAAACGCCATGCACGCTTCCAGCCTCGCCCTGCCCCTGACCCAGCCGCAAGCGGCCAACACCACTGTCAGCAGACGCCTGCCCAGCC                        <  2:411449/128‑1                                                                                                                                                   GGCCGACCATGCGGGCTTGAACCCGCTGTCCGCCCAGGGAAAAACGCCATTCACGCTTCCAGCCTCGCCCTGCCCCTGACCCAGCCGCAAGCGGCCAACACCACTGTCAGCAGACGCCTGCCCAGCCCGCACCTGCTCAAGCAGCAGAT  >  2:69246/1‑149                                                                                                                                                                                                                                                                                                         GACTTGCTGGGCCAGTTCGCTGGGCAGTGGCATCTGCTGCTTGAGCAGGTGCGGGCTGGGCAGGCGTCTGCTGACAGTGGTGTTGGCCGCTTGCGGCTGGGTCAGGGGCAGGGCGAGGCTGGAAGCGTGCATGGCGTTTTTCCCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3465663‑3465811 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcCGACCATGCGGGCTTGAACCCGCTGTCCGCCCAGGGAAAAACGCCATGCACGCTTCCAGCCTCGCCCTGCCCCTGACCCAGCCGCAAGCGGCCAACACCACTGTCAGCAGACGCCTGCCCAGCCCGCACCTGCTCAAGCAGCAGAT  <  NC_002947/3465839‑3465694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.