| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3694376 | 49 (0.770) | 4 (0.070) | 4/240 | NT | 8.2% | coding (1792/2502 nt) | ligD | DNA ligase D |
| ? | NC_002947 | = 3694424 | 43 (0.710) | coding (1744/2502 nt) | ligD | DNA ligase D | |||||
AGGTGTGCAGCTCCAGCATGTTCATCTGCACCGCACCCAGCAGCGTATCGGCGCGATTGATGACCATCGCTGCCTGGCCGGCCTCGGCCTTTTCGTAGCTGAGTACGTTGGGTATGTACAGTTGGCCCGCGTTTTTCTGGAAGAACAGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3694226‑3694376‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acagctcAAGCACCGCCCGGTGGCATTGGTGCGCGCCCCGGACGGCCTGGGCGGCGAGCTGTTCTTC < NC_002947/3694424‑3694365 AGGTGTGCAGCTCCAGCATGTTCATCTGCACCGCACCCAGCAGCGTATCGGCGCGATTGATGACCATCGCTGCCTGGCCGGCCTCGGCCTTTTCGTAGCTGAGTACGTTGGGTATGTACAGTTGGCCCGCGTTTTTCTGGAAGAACAGC > 7:203699/1‑149AGGTGTGCAGCTCCAGCATGTTCATCTGCACCGCACCCAGCAGCGTATCGGCGCGATTGATGACCATCGCTGCCTGGCCGGCCTCGGCCTTTTCGTAGCTGAGTACGTTGGGTATGTACAGTTGGCCCGCGTTTTTCTGGAAGAACAGC < 8:118392/149‑1 GTGTGTAGCTCCAGCATGTTCATCTGCACCGCACCCAGCAGCGTATCGGCGCGATTGATGACCATCGCTGCCTGGCCGGCCTCGGCCTTTTCGTAGCTGAGTACGTTGGGTATGTACAGTTGGCCCGCGTTTTTCTGGAAGAACAGCTC > 3:174427/1‑149 GCACCGCACCCAGCAGCGTATCGGCGCGATTGATGACCATCGCTGCCTGGCCGGCCTCGGCCTTTTCGTAGCTGAGTACGTTGGGTATGTACAGTTGGCCCGCGTTTTTCTGGAAGAACAGCTCAAGCACCGCCCGGTGGCATTGGTGC > 2:289775/1‑149 ACCATCGCTGCCTGGCCGGCCTCGGCCTTTTCGTAGCTGAGTACGTTGGGTATGTACAGTTGGCCCGCGTTTTTCTGGAAGAACAGCTCAAGCACCGCCCGGTGGCATTGGTGCGCGCCCCGGACGGCCTGGGCGGCGAGCTGTTCTTC < 1:289775/149‑1 CGGCCTCGGCCTTTTCGTAGCTGAGTACGTTGGGTATGTACAGTTGGCCCGCGTTTTTCTGGAAGAACAGCTCAAGCACCGCCCGGTGGCATTGGTGCGCGCCCCGGACGGCCTGGGCGGCGAGCTG < 7:200753/127‑1 CGGCCTCGGCCTTTTCGTAGCTGAGTACGTTGGGTATGTACAGTTGGCCCGCGTTTTTCTGGAAGAACAGCTCAAGCACCGCCCGGTGGCATTGGTGCGCGCCCCGGACGGCCTGGGCGGCGAGCTG > 8:200753/1‑127 AGGTGTGCAGCTCCAGCATGTTCATCTGCACCGCACCCAGCAGCGTATCGGCGCGATTGATGACCATCGCTGCCTGGCCGGCCTCGGCCTTTTCGTAGCTGAGTACGTTGGGTATGTACAGTTGGCCCGCGTTTTTCTGGAAGAACAGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3694226‑3694376‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acagctcAAGCACCGCCCGGTGGCATTGGTGCGCGCCCCGGACGGCCTGGGCGGCGAGCTGTTCTTC < NC_002947/3694424‑3694365 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |