New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3914675	52 (0.810)	3 (0.050)	3/242	NT	5.4%	coding (112/702 nt)	PP_3454	transcriptional regulator
	?	NC_002947	= 3914699	55 (0.900)					coding (88/702 nt)	PP_3454	transcriptional regulator

TGGTCATGGCTATCGTCGCGGGCCGTCAGCATGAGGATTGGCAGGGTCTGCGACTCCTGGCGCAGCAGCCGGCACAGCTGCAGGCCATCGATGCCCGGCAGCATCAGGTCAAGGATGACCAGGTCAGGCCTTTGCCGACGGTACTCGTCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3914524‑3914675 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccagGTGATCGCCCGGGGCGATCATGTGCTGGACGAGTACCGTCGGCAAAGGCCTGACCTGGTCATCCTTGACCTGATGCTGCCGGGCATCGATGGCCTGCAGCTGTGCCGGCTGCTGCGCCAGGAGTCGCAGACCCTGCCAATCCTCATG  <  NC_002947/3914699‑3914553                                                                                                                                                                                                                                                                                                             TGGTCATGGCTATCGTCGCGGGCCGTCAGCATGAGGATTGGCAGGGTCTGCGACTCCTGGCGCAGCAGCCGGCACAGCTGCAGGCCATCGATGCCCGGCAGCATCAGGTCAAGGATGACCAGGTCAGGCCTTTGCCGACGGTACTCGTC                                                                                                                                                        >  6:38775/1‑149   GTCATGGCTATCGTCGCGGGCCGTCAGCATGAGGATTGGCAGGGTCTGCGACTCCTGGCGCAGCAGCCGGCACAGCTGCAGGCCATCGATGCCCGGCAGCATCAGGTCAAGGATGACCAGGTCAGGCCTTTGCCGACGGTACTCGTCC                                                                                                                                                       <  1:200725/148‑1   GTCATGGCTATCGTCGCGGGCCGTCAGCATGAGGATTGGCAGGGTCTGCGACTCCTGGCGCAGCAGCCGGCACAGCTGCAGGCCATCGATGCCCGGCAGCATCAGGTCAAGGATGACCAGGTCAGGCCTTTGCCGACGGTACTCGTCC                                                                                                                                                       <  8:315333/148‑1                                     ATTGGCAGGGTCTGCGACTCCTGGCGCAGCAGCCGGCACAGCTGCAGGCCATCGATGCCCGGCAGCATCAGGTCAAGGATGACCAGGTCAGGCCTTTGCCGACGGTACTCGTCCAGGTGATCGCCCGGGGCGATCATGTGCTGGACGAG                                                                                                                    <  3:71553/149‑1                                                      CTCCTGGCGCAGCAGCCGGCACAGCTGCAGGCCATCGATGCCCGGCAGCATCAGGTCAAGGATGACCAGGTCAGGCCTTTGCCGACGGTACTCGTCCAGGTGATCGCCCGGGGCGATCATGTGCTGGACGAGT                                                                                                                   >  3:57125/1‑133                                                      CTCCTGGCGCAGCAGCCGGCACAGCTGCAGGCCATCGATGCCCGGCAGCATCAGGTCAAGGATGACCAGGTCAGGCCTTTGCCGACGGTACTCGTCCAGGTGATCGCCCGGGGCGATCATGTGCTGGACGAGT                                                                                                                   <  4:57125/133‑1                                                                                                                                                   GTCCAGGTGATCGCCCGGGGCGATCATGTGCTGGACGAGTACCGTCGGCAAAGGCCTGACCTGGTCATCCTTGACCTGATGCTGCCGGGCATCGATGGCCTGCAGCTGTGCCGGCTGCTGCGCCAGGAGTCGCAGACCCTGCCAATCCT      >  4:77886/1‑149                                                                                                                                                     CCAGGTGATCGCCCGGGGCGATCATGTGCTGGACGAGTACCGTCGGCAAAGGCCTGACCTGGTCATCCATGACCTGATGCTGCCGGGCATCGATGGCCTGCAGCTGTGCCGGCTGCTGCGCCAGGAGTCGCAGACCCTGCCAATCCTCA    >  6:379528/1‑149                                                                                                                                                      CAGGTGATCGCCCGGGGCGATCATGTGCTGGACGAGTACCGTCGAGAAAGGCCTGACCTGGTCATCCTTGACCTGATGCTGCCGGGCATCGATGGCCTGCAGCTGTGCCGGCTGCTGCGCCAGGAGTCGCAGACCCTGCCAATCCTCAT   >  1:291857/1‑149                                                                                                                                                       AGGTGATCGCCCGGGGCGATCATGTGCTGGACGAGTACCGTCGGCAAAGGCCTGACCTGGTCATCCTTGACCTGATGCTGCCGGGCATCGATGGCCTGCAGCTGTGCCGGCTGCTGCGCCAGGAGTCGCAGACCCTGCCAATCCTCATG  <  3:77886/149‑1                                                                                                                                                                                                                                                                                                             TGGTCATGGCTATCGTCGCGGGCCGTCAGCATGAGGATTGGCAGGGTCTGCGACTCCTGGCGCAGCAGCCGGCACAGCTGCAGGCCATCGATGCCCGGCAGCATCAGGTCAAGGATGACCAGGTCAGGCCTTTGCCGACGGTACTCGTCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3914524‑3914675 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccagGTGATCGCCCGGGGCGATCATGTGCTGGACGAGTACCGTCGGCAAAGGCCTGACCTGGTCATCCTTGACCTGATGCTGCCGGGCATCGATGGCCTGCAGCTGTGCCGGCTGCTGCGCCAGGAGTCGCAGACCCTGCCAATCCTCATG  <  NC_002947/3914699‑3914553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.