New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4030942	38 (0.590)	3 (0.050)	3/238	NT	5.9%	coding (605/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein
	?	NC_002947	= 4031001	60 (1.000)					coding (664/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein

ACCTGCCACCGCTGTACGAAGGCCGCTGGGCCGGCACCATGTGCCTGACCGAACCCCATGCCGGCACTGACCTGGGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4030789‑4030942 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggcggGCGCATCCGGCATTTTGGCCAGCACCAGGTGGACGATGTTCTCGGTCAGGTCCTGCTCGCCGCCGGTAATGAAGATCTTGCTGCCACTGATGCGCACGCTGCCATCGGCCTGAGGCTCGGCGCGGGTGCGGATCAGCCCCAGG  <  NC_002947/4031001‑4030859                                                                                                                                                                                                                                                                                                           ACCTGCCACCGCTGTACGAAGGCCGCTGGGCCGGAACCATGTGCAAGACCGAACCCCATGCCGGCACAGACCTGGGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGAAGGCAGCGTCCGCATCACTGCCAGCAAGATCTACATTACC                                                                                                                                                      >  5:150621/1‑149                                           GCCTGACCGAACCCCATGCCGGCACTGACCTGGGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGGCGCATCCGGCATTTTGGCCAGCACCAGGTGGACGAT                                                                                                            >  3:38783/1‑149                                                                           GGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGGCGCATCCGGCATTTTGGCCAGCACCAGGTGGACGATGTTCTCGGTCAGGTCCTGCTCGCCGCCGGTAA                                                                            <  4:38783/149‑1                                                                                 ATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGGCGCATCCGGCATTTTGGCCAGCACCAGGTGGACGATGTTCTCGGTCAGGTCCTGCTCGCCGCCGGTAATGAA                                                                        <  8:380824/147‑1                                                                                                                                                   ACCGGCGGGCGCATCCGGCATTTTGGCCAGCACCAGGTGGACGATGTTCTCGGTCAGGTCCTGCTCGCCGCCGGTAATGAAGATCTTGCTGCCACTGATGCGCACGCTGCCATCGGCCTGAGGCTCGGCGCGGGTGCGGATCAGCCC      >  5:375508/1‑147                                                                                                                                                    CCGGCGGGCGCATCCGGCATTTTGGCCAGCACCAGGTGGACGATGTTCTCGGCCAGGTCCTGCTCGCCGCCGGTAATGAAGATCTTGCTGCCACTGATGCGCACGCTGCCATCGGCCTGAGGCTCGGCGCGGGTGCGGATCAGCCCCAG   <  5:394998/149‑1                                                                                                                                                     CGGCGGGCGCATCCGGCATTTTGGCCAGCACCAGGTGGACGATGTTCTCGGTCAGGTCCTGCTCGCCGCCGGTAATGAAGATCTTGCTGCCACTGATGCGCACGCTGCCATCGGCCTGAGGCTCGGCGCGGGTGCGGATCAGCCCCAGG  <  7:24715/149‑1                                                                                                                                                                                                                                                                                                           ACCTGCCACCGCTGTACGAAGGCCGCTGGGCCGGCACCATGTGCCTGACCGAACCCCATGCCGGCACTGACCTGGGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4030789‑4030942 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggcggGCGCATCCGGCATTTTGGCCAGCACCAGGTGGACGATGTTCTCGGTCAGGTCCTGCTCGCCGCCGGTAATGAAGATCTTGCTGCCACTGATGCGCACGCTGCCATCGGCCTGAGGCTCGGCGCGGGTGCGGATCAGCCCCAGG  <  NC_002947/4031001‑4030859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.