New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4030942	38 (0.590)	3 (0.050)	3/238	NT	5.9%	coding (605/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein
	?	NC_002947	= 4031001	60 (1.000)					coding (664/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein

ACCGCTGTACGAAGGCCGCTGGGCCGGCACCATGTGCCTGACCGAACCCCATGCCGGCACTGACCTGGGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCAAATTCCTGGTCGAGGCCGACGGCCGTCTGGGCGCGCGTAACGCTG  >  NC_002947/4030796‑4031085                                                                                                                                                   |                                                                                                                                                aCCGCTGTACGAAGGCCGCTGGGCCGGCACCATGTGCCTGACCGAACCCCATGCCGGCACTGACCTGGGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCggcggc                                                                                                                                                >  7:159382/1‑148 (MQ=255)      tGTACGAAGGCCGCTGGGCCGGCACCATGTGCCTGACCGAACCCCATGCCGGCACTGACCTGGGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAg                                                                                                                                          >  8:222632/1‑149 (MQ=255)        tACGAAGGCCGCTGGGCCGGCACCATGTGCCTGACCGAACCCCATGCCGGCACTGACCTGGGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAgg                                                                                                                                         <  2:361905/148‑1 (MQ=255)                 cgattggCCGGCACCATGTGCCTGACCGAACCCCATGCAGGCACTGAGCTGGTGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGTTGTCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGTCGGCGAGCAGGACCTGACCg                                                                                                                                <  6:150621/143‑1 (MQ=37)                          ggCACCATGTGCCTGACCGAACCCCATGCCGGCACTGACCTGGGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGt                                                                                                                      >  8:248413/1‑149 (MQ=255)                               cATGTGCCTGACCGAACCCCCTGCCGGCACTGACCTGGGGCTGCTCCGCACCCGCGCCGAGCCTCAGGCGGATGGCAGCTTGCGCATCAGTGGCAGGAAGATCTTGATTACCGGCTGCGAGCAGGACCTGACCGAGAACATCGTCCAcc                                                                                                                 <  4:240725/149‑1 (MQ=255)                                    gCCTGACCGAACCCCATGCCGGCACTGACCTGGGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGgcgcatccggcattttggccagcaccaggtggacgat                                                                                                            >  3:38783‑M1/1‑112 (MQ=255)                                     ccTGACCGAACCCCATGCCGGCACTGACCTGGGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGc                                                                                                           >  8:64709/1‑149 (MQ=255)                                         aCCGAACCCCATGCCGGCACTGACCTGGGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTg                                                                                                         <  1:19588/147‑1 (MQ=255)                                         aCCGAACCCCATGCCGGCACTGACCTGGGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTg                                                                                                         <  7:222632/147‑1 (MQ=255)                                               ccccATGCCGGCACTGACCTGGGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACAGAGAACATCGTCCACCTTGTGCTGGCCAAAAt                                                                                                 <  8:159382/149‑1 (MQ=255)                                                          cACTGACCTGGGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATgcgc                                                                                      >  4:354443/1‑149 (MQ=255)                                                                ccTGGGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCccgccg                                                                                <  7:24715‑M2/149‑7 (MQ=255)                                                                 cTGGGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGGCCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCccgccgg                                                                               <  5:394998‑M2/149‑8 (MQ=255)                                                                    gggCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGgcgcatccggcattttggccagcaccaggtggacgatgttctcggtcaggtcctgctcgccgccggtaa                                                                            <  4:38783‑M1/149‑70 (MQ=255)                                                                    gggCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCccgccggt                                                                              >  5:375508‑M2/1‑139 (MQ=255)                                                                        tGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGc                                                                                                                                            >  4:268343/1‑81 (MQ=255)                                                                        tGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGc                                                                                                                                            <  3:268343/81‑1 (MQ=255)                                                                          aTCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGgcgcatccggcattttggccagcaccaggtggacgatgttctcggtcaggtcctgctcgccgccggtaatgaa                                                                        <  8:380824‑M1/147‑74 (MQ=255)                                                                          aTCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAgg                                                                      >  8:276128/1‑149 (MQ=255)                                                                          aTCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAgg                                                                      >  2:61467/1‑149 (MQ=255)                                                                              gCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGc                                                                     <  4:248569/146‑1 (MQ=255)                                                                              gCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGc                                                                     >  3:248569/1‑146 (MQ=255)                                                                                aCCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATc                                                                >  3:152091/1‑149 (MQ=255)                                                                                       ccGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTc                                                         <  4:152091/149‑1 (MQ=255)                                                                                       ccGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTc                                                         <  1:61467/149‑1 (MQ=255)                                                                                             cTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTCCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTg                                                   >  8:219134/1‑149 (MQ=255)                                                                                              tCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTgg                                                                                                        <  6:405709/95‑1 (MQ=255)                                                                                              tCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTgg                                                                                                        >  5:405709/1‑95 (MQ=255)                                                                                                aGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGccc                                                <  8:24715/149‑1 (MQ=255)                                                                                                           aGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCAAATTCCTGGt                                     >  6:111763/1‑149 (MQ=255)                                                                                                              gTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCAAATTCCTGGTCGa                                  <  3:354443/149‑1 (MQ=255)                                                                                                                 cgcATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGGCCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCAAATTCCTGGTCGAgg                                <  6:394998/148‑1 (MQ=255)                                                                                                                 cgcATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCAAATTCCTGGTCGAGGc                               >  1:411390/1‑149 (MQ=255)                                                                                                                  gcATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCAAATTCCTGGTCGAGGcc                              >  4:256526/1‑149 (MQ=255)                                                                                                                    aTCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCAAATTCCTGGTCGAGGCCGa                            >  6:311974/1‑149 (MQ=255)                                                                                                                            cagcaAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCAAATTCCTGGTCGAGGCCGACGGCCGTc                    <  7:248413/149‑1 (MQ=255)                                                                                                                               caAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCAAATTCCTGGTCGAGGCCGACGGCCGTCTgg                 <  5:111763/149‑1 (MQ=255)                                                                                                                                 aGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCAAATTCCTGGTc                                    <  8:99019/128‑1 (MQ=255)                                                                                                                                 aGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCAAATTCCTGGTc                                    >  7:99019/1‑128 (MQ=255)                                                                                                                                      ttCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCccgccggtaatgaagatcttgctgccactgatgcgcacgctgccatcggcctgaggctcggcgcgggtgcggat            <  8:380824‑M2/147‑75 (MQ=255)                                                                                                                                       tCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCaa                                              >  3:183064/1‑112 (MQ=255)                                                                                                                                       tCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCaa                                              <  4:183064/112‑1 (MQ=255)                                                                                                                                          ttACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCccgccggtaatgaagatcttgctgccactgatgcgcacgctgccatcggcctgaggctcggcgcgggtgcggatcagccc      <  4:38783‑M2/149‑81 (MQ=255)                                                                                                                                           tACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCAAATTcc                                         <  1:147959/113‑1 (MQ=255)                                                                                                                                           tACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCAAATTcc                                         >  2:147959/1‑113 (MQ=255)                                                                                                                                            aCCGGCGGgcgcatccggcattttggccagcaccaggtggacgatgttctcggtcaggtcctgctcgccgccggtaatgaagatcttgctgccactgatgcgcacgctgccatcggcctgaggctcggcgcgggtgcggatcagccc      >  5:375508‑M1/1‑8 (MQ=255)                                                                                                                                            aCCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCAAATTCCTGGTCGAGGCCGACGGCCGTCTGGGCGCGCGTAACg     <  7:64709/148‑1 (MQ=255)                                                                                                                                             ccGGCGGgcgcatccggcattttggccagcaccaggtggacgatgttctcggccaggtcctgctcgccgccggtaatgaagatcttgctgccactgatgcgcacgctgccatcggcctgaggctcggcgcgggtgcggatcagccccag   <  5:394998‑M1/149‑143 (MQ=255)                                                                                                                                              cggcgggcgcatccggcattttggccagcaccaggtggacgatgttctcggtcaggtcctgctcgccgccggtaatgaagatcttgctgccactgatgcgcacgctgccatcggcctgaggctcggcgcgggtgcggatcagccccagg  <  7:24715‑M1/149‑144 (MQ=255)                                                                                                                                              cggcggCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCAAATTCCTGGTCGAGGCCGACGGCCGTCTGGGCGCGCGTAACGCTg  >  5:422882/1‑149 (MQ=255)                                                                                                                                              cggcggCGAGCAGGACCTGACCGAGAACATCGTCCACCAGGTGATGGCCAAAATGCCGGATTCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCAAATTCCTGGTCGAGGCCGACGGCCGTCTGGGCCCGCGTAACGCTg  >  5:399006/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                ACCGCTGTACGAAGGCCGCTGGGCCGGCACCATGTGCCTGACCGAACCCCATGCCGGCACTGACCTGGGGCTGATCCGCACCCGCGCCGAGCCTCAGGCCGATGGCAGCGTGCGCATCAGTGGCAGCAAGATCTTCATTACCGGCGGCGAGCAGGACCTGACCGAGAACATCGTCCACCTGGTGCTGGCCAAAATGCCGGATGCGCCCGCCGGTGCCAAAGGCATATCGCTGTTCCTGGTGCCCAAATTCCTGGTCGAGGCCGACGGCCGTCTGGGCGCGCGTAACGCTG  >  NC_002947/4030796‑4031085

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.