New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4326128	58 (0.910)	3 (0.050)	3/246	NT	5.2%	coding (606/1335 nt)	pvdA	L‑ornithine 5‑monooxygenase
	?	NC_002947	= 4326163	54 (0.870)					coding (641/1335 nt)	pvdA	L‑ornithine 5‑monooxygenase

AGACAAGGCCGCGAATACAGCCGCCCCACCCGCTCGGTGGTGGTGGGCAGCGGTGGCACACCGAAAATTCCGGAAAACTTCGGCGCCTTCAAGGACGACCCGCGAGTGTTCCACCACTCTCAGTACCTGAGCAGCCTGACCAAACTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4325979‑4326128 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgATCACGGCAATGCGCATGGGCTTGCCAGCCGTGCACGGCAGTTTG  <  NC_002947/4326163‑4326119                                                                                                                                                                                                     AGACAAGGCCGCGAATACAGCCGCCCCACCCGCTCGGTGGTGGTGGGCAGCGGTGGCACACCGAAAATTCCGGAAAACTTCGGCGCCTTCAAGGACGACCCGCGAGTGTTCCACCACTCTCAGTACCTGAGCAGCCTGACCAAACTGCC                                                >  3:127507/1‑149 AGACAAGGCCGCGAATACAGCCGCCCCACCCGCTCGGTGGTGGTGGGCAGCGGTGGCACACCGAAAATTCCGGAAAACTTCGGCGCCTTCAAGGACGACCCGCGAGTGTTCCACCACTCTCAGTACCTGAGCAGCCTGACCAAACTGCC                                                <  3:62275/149‑1                                          GGTGGGCAGCGGTGGCACACCG‑AAATTCCGGAAAACTTCGGCGCCTTCAAGGACGACCCGCGAGTGTTCCACCACTCTCAGTACCTGAGCAGCCTGACCAAACTGCCGATCACGGCAATGCGCATGGGCTTGCCAGCCGTGCACGGCAG      <  3:323947/149‑1                                                                                        TTCAAGGACGACCCGCGAGTGTTCCACCACTCTCAGTACCTGAGCAGCCTGACCAAACTGCCGATCACGGCAATGCGCATGGGCTTGCCAGCCGTGCACGGCAGTTTG  <  5:89750/108‑1                                                                                        TTCAAGGACGACCCGCGAGTGTTCCACCACTCTCAGTACCTGAGCAGCCTGACCAAACTGCCGATCACGGCAATGCGCATGGGCTTGCCAGCCGTGCACGGCAGTTTG  >  6:89750/1‑108                                                                                                                                                                                                     AGACAAGGCCGCGAATACAGCCGCCCCACCCGCTCGGTGGTGGTGGGCAGCGGTGGCACACCGAAAATTCCGGAAAACTTCGGCGCCTTCAAGGACGACCCGCGAGTGTTCCACCACTCTCAGTACCTGAGCAGCCTGACCAAACTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4325979‑4326128 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgATCACGGCAATGCGCATGGGCTTGCCAGCCGTGCACGGCAGTTTG  <  NC_002947/4326163‑4326119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.