| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4604411 = | 58 (0.910) | 5 (0.080) | 4/238 | NT | 7.6% | coding (241/411 nt) | PP_4076 | hypothetical protein |
| ? | NC_002947 | 4604450 = | 67 (1.120) | coding (280/411 nt) | PP_4076 | hypothetical protein | |||||
CGGTTGTGTCCGTTTACCAGCAGCTCAAGCTGCAACTGCTCTGCCTGGTTGTTGACCTGCACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4604562‑4604411‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaaagcgGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTG > NC_002947/4604450‑4604593 CGGTTGTGTCCGTTTACCAGCAGCTCAAGCTGCAACTGCTCTGCCTGGTTGTTGACCTGCACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCA > 2:325109/1‑147CGGTTGTGTCCGTTTACCAGCAGCTCAAGCTGCAACTGCTCTGCCTGGTTGTTGACCTGCACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCA > 3:336066/1‑147 GCAACTGCTCTGCCTGGTTGTTGACCTGCACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAAGC < 5:72793/120‑1 GCAACTGCTCTGCCTGGTTGTTGACCTGCACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAAGC > 6:72793/1‑120 CACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAA < 5:143737/90‑1 CACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAA > 6:143737/1‑90 CGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAA > 2:220446/1‑149 GCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAG > 7:74994/1‑107 GCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAG < 8:74994/107‑1 GCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAG < 1:287265/95‑1 GCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAG > 2:287265/1‑95 AAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGC > 5:67242/1‑88 AAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGC < 6:67242/88‑1 AAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACT > 2:345474/1‑148 GCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTG > 1:371268/1‑147 CGGTTGTGTCCGTTTACCAGCAGCTCAAGCTGCAACTGCTCTGCCTGGTTGTTGACCTGCACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4604562‑4604411‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaaagcgGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTG > NC_002947/4604450‑4604593 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |