New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5221051 =	74 (1.160)	4 (0.060)	3/250	NT	5.4%	coding (177/888 nt)	PP_4601	LysR family transcriptional regulator
	?	NC_002947	5221098 =	66 (1.050)					coding (224/888 nt)	PP_4601	LysR family transcriptional regulator

AGCAGGTGCATGGGGTTGAAACTGGCCAGCGGCACCGTGCCCAGGCGCAGGCTGCCGACCACCTGGCCACGGCAACTGGCAGCCTCGGCCTGCAGGCCGTCATGGGCGGCGAGCAGGGTACGGGCCCAGGCCAGGATGCGCTCGCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5221200‑5221051 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccATGACGGCCTGCAGGCCGAGGCTGCCAGTTGCCGTGGCCAGGTGGTCGGCAGCCTGCGCCTGGGCACGGTGCCGCTGGCCAGTTTCAACCCCATGCACCTGCT  >  NC_002947/5221098‑5221200                                                                                                                                                                                                                                                               AGCAGGTGCATGGGGTTGAAACTGGCCAGCGGCACCGTGCCCAGGCGCAGGCTGCCGACCACCTGGCCACGGCAACTGGCAGCCTCGGCCTGCAGGCCGTCATGGGCGGCGAGCAGGGTACGGGCCCAGGCCAGGATGCGCTCGCCGGC                                                                                                          <  4:408166/149‑1                                                                                                       TGGGCGGCGAGCAGGGTACGGGCCCAGGCCAGGATGCGCTCGCCGGCCATGACGGCCTGCAGGCCGAGGCTGCCAGTTGCCGTGGCCAGGTGGTCGGCAGCCTGCGCCTGGGCACGGTGCCG                               <  5:274362/122‑1                                                                                                       TGGGCGGCGAGCAGGGTACGGGCCCAGGCCAGGATGCGCTCGCCGGCCATGACGGCCTGCAGGCCGAGGCTGCCAGTTGCCGTGGCCAGGTGGTCGGCAGCCTGCGCCTGGGCACGGTGCCG                               >  6:274362/1‑122                                                                                                         GGCGGCGAGCAGGGTACGGGCCCAGGCCAGGATGCGCTCGCCGGCCATGACGGCCTGCAGGCCGAGGCTGCCAGTTGCCGTGGCCAGGTGGTCGGCAGCCTGCGCCTGGGCACGGTGCAGCTGGCCAGTTTCAACCCCATGCACCTGCT  >  4:313141/1‑149                                                                                                         GGCGGCGAGCAGGGAACGGGCCCAGGCCAGGATGAGCTAGACGGCCATGACGGCCTGCAGGCCGAGGCTGCCAGTTGCCGTGGCCACGTGGTCGGCAGCCTGCGCCTGGGCACGGTGCCGCTGGCAAGTTTCAACCACATGCACCTGCT  >  1:23788/1‑149                                                                                                                                                                                                                                                               AGCAGGTGCATGGGGTTGAAACTGGCCAGCGGCACCGTGCCCAGGCGCAGGCTGCCGACCACCTGGCCACGGCAACTGGCAGCCTCGGCCTGCAGGCCGTCATGGGCGGCGAGCAGGGTACGGGCCCAGGCCAGGATGCGCTCGCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5221200‑5221051 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccATGACGGCCTGCAGGCCGAGGCTGCCAGTTGCCGTGGCCAGGTGGTCGGCAGCCTGCGCCTGGGCACGGTGCCGCTGGCCAGTTTCAACCCCATGCACCTGCT  >  NC_002947/5221098‑5221200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.