New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5248442 =	84 (1.310)	4 (0.070)	4/242	NT	5.0%	coding (219/3303 nt)	PP_4623	hypothetical protein
	?	NC_002947	5248487 =	71 (1.160)					coding (174/3303 nt)	PP_4623	hypothetical protein

AGCACAGTTCATGTCTTTCGATTTCAATTTTGGCACCCCCAATCTCGGTGAGGGGTGCCCAGATCCACGCTCTGTGAAAGAACAGGTGAAGGCCATGATGGCTCACGCCCAGGAGCTGCAACAACTGATGGCTACGGTTGCGCAACTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5248592‑5248442 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggcGTGAGCCATCATGGCCTTCACCTGTTCTTTCACAGAGCGTGGATCTGGGCACCCCTCACCGAGATTGGGGGTGCCAAAATTGAAATCGAAAGACATGAACTGTGCTCCAAAATTACCGAAGCAGCAGAGTGAACGGATGATAAAGG  >  NC_002947/5248487‑5248632                                                                                                                                                                                                                                                                                                           AGCACAGTTCATGTCTTTCGATTTCAATTTTGGCACCCCCAATCTCGGTGAGGGGTGCCCAGATCCACGCTCTGTGAAAGAACAGGTGAAGGCCATGATGGCTCACGCCCAGGAGCTGCAACAACTGATGGCTACGGTTGCGCAACTGG                                                                                                                                                      <  8:188847/149‑1                TTTCGATTTCAATTTTGGCACCCCCAATCTCGGTGAGGGGTGCCCAGATCCACGCTCTGTGAAAGAACAGGTGAAGGCCATGATGGCTCACGCCCAGGAGCTGCAACAACTGATGGCTACGGTTGCGCAAC                                                                                                                                                         >  1:121062/1‑131                TTTCGATTTCAATTTTGGCACCCCCAATCTCGGTGAGGGGTGCCCAGATCCACGCTCTGTGAAAGAACAGGTGAAGGCCATGATGGCTCACGCCCAGGAGCTGCAACAACTGATGGCTACGGTTGCGCAAC                                                                                                                                                         <  2:121062/131‑1                                                                                                            CCCAGGAGCTGCAACAACTGATGGCTACGGTTGCGCAACTGGGCGTGAGCCATCATGGCCTTCACCTGTTCTTTCACAGAGCGTGGATCTGGGCACCCCTCACCGAGATTGGGGGTTCCAAAATTGAAATCGAAAGACATGAACTGTG                                            <  1:251234/148‑1                                                                                                            CCCAGGAGCTGCAACAACTGATGGCTACGGTTGCGCAACTGGGCGTGAGCCATCATGGCCTTCACCTGTTCTTTCACAGAGCGTGGATCTGGGCACCCCTCACCGAGATTGGGGGTGCCAAAATTGAAATCGAAAGACATGAACTGTG                                            >  2:251234/1‑148                                                                                                             CCAGGAGCTGCAACAACTGATGGCTACGGTTGCGCAACTGGGCGTGAGCCATCATGGCCTTCACCTGTTCTTTCACAGAGCGTGGATCTGGGCACCCCTCACCGAGATTGGGGGT                                                                            <  8:344299/115‑1                                                                                                             CCAGGAGCTGCAACAACTGATGGCTACGGTTGCGCAACTGGGCGTGAGCCATCATGGCCTTCACCTGTTCTTTCACAGAGCGTGGATCTGGGCACCCCTCACCGAGATTGGGGGT                                                                            >  7:344299/1‑115                                                                                                                                                  CTGGGCGTGAGCCATCATGGCCTTCACCTGTTCTTTCACAGAGCGTGGATCTGGGCACCCCTCACCGAGATTGGGGGTGCCAAAATTGAAATCGAAAGACATGAACTGTGCTCCAAAATTACCGAAGCAGCAGAGTGAACGGATGATA      <  1:249195/148‑1                                                                                                                                                  CTGGGCGTGAGCCATCATGGCCTTCACCTGTTCTTTCACAGAGCGTGGATCTGGGCACCCCTCACCGAGATTGGGGGTGCCAAAATTGAAATCGAAAGACATGAACTGTGCTCCAAAATTACCGAAGCAGCAGAGTGAACGGATGATA      <  8:222374/148‑1                                                                                                                                                  CTGGGCGTGAGCCATCATGGCCTTCACCTGTTCTTTCACAGAGCGTGGATCTGGGCACCCCTCACCGAGATTGGGGGTGCCAAAATTGAAATCGAAAGACATGAACTGTGCTCCAAAATTACCGAAGCAGCAGAGTGAACGGATGATA      >  1:63960/1‑148                                                                                                                                                  CTGGGCGTGAGCCATCATGGCCTTCACCTGTTCTTTCACAGAGCGTGGATCTGGGCACCCCTCACCGAGATTGGGGGTGCCAAAATTGAAATCGAAAGACATGAACTGTGCTCCAAAATTACCGAAGCAGCAGAGTGAACGGATGAT       <  5:134670/147‑1                                                                                                                                                  CTGGGCGTGAGCCATCATGGCCTTCACCTGTTCTTTCACAGAGCGTGGATCTGGGCACCCCTCACCGAGATTGGGGGTGCCAAAATTGAAATCGAAAGACATGAACTGTGCTCCAAAATTACCGAAGCAGCAGAGTGAACGGATGAT       <  1:381814/147‑1                                                                                                                                                  CTGGGCGTGAGCCATCATGGCCTTCACCTGTTCTTTCACAGAGCGTGGATCTGGGCACCCCTCACCGAGATTGGGGGTGCCAAAATTGAAATCGAAAGACATGAACTGTGCTCCAAAATTACC                               <  5:354014/123‑1                                                                                                                                                  CTGGGCGTGAGCCATCATGGCCTTCACCTGTTCTTTCACAGAGCGTGGATCTGGGCACCCCTCACCGAGATTGGGGGTGCCAAAATTGAAATCGAAAGACATGAACTGTGCTCCAAAATTACC                               >  6:354014/1‑123                                                                                                                                                    GGGCGTGAGCCATCATGGCCTTCACCTGTTCTTTCACAGAGCGTGGATCTGGGCACCCCTCACCGAGATTGGGGGTGCCAAAATTGAAATCGAAAGACATGAACTGTGCTCCAAAATTACCGAAGCAGCAGAGTGAACGGA           >  4:198572/1‑141                                                                                                                                                    GGGCGTGAGCCATCATGGCCTTCACCTGTTCTTTCACAGAGCGTGGATCTGGGCACCCCTCACCGAGATTGGGGGTGCCAAAATTGAAATCGAAAGACATGAACTGTGCTCCAAAATTACCGAAGCAGCAGAGTGAACGGA           <  3:198572/141‑1                                                                                                                                                     GGCGTGAGCCATCATGGCCTTCACCTGTTCTTTCACAGAGCGTGGATCTGGGCACCCCTCACCGAGATTGGGGGTGCCAAAATTGAAATCGAAAGACATGAACTGTGCTCCAAAATTACCGAAGCAGCAGAGTGAACGGATGATAAAG   <  2:374718/148‑1                                                                                                                                                      GCGTGAGCCATCATGGCCTTCACCTGTTCTTTCACAGAGCGTGGATCTGGGCACCCCTCACCGAGATTGGGGGTGCCAAAATTGAAATCGAAAGACATGAACTGTGCTCCAAAATTACCGAAGCAGCAGAGTGAACGGATGATAAAGG  <  7:29511/148‑1                                                                                                                                                       CGTGAGCCATCATGGCCTTCACCTGTTCTTTCACAGAGCGTGGATCTGGGCACCCCTCACCGAGATTGGGGGTGCCAAAATT                                                                   >  4:215821/1‑82                                                                                                                                                                                                                                                                                                           AGCACAGTTCATGTCTTTCGATTTCAATTTTGGCACCCCCAATCTCGGTGAGGGGTGCCCAGATCCACGCTCTGTGAAAGAACAGGTGAAGGCCATGATGGCTCACGCCCAGGAGCTGCAACAACTGATGGCTACGGTTGCGCAACTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5248592‑5248442 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggcGTGAGCCATCATGGCCTTCACCTGTTCTTTCACAGAGCGTGGATCTGGGCACCCCTCACCGAGATTGGGGGTGCCAAAATTGAAATCGAAAGACATGAACTGTGCTCCAAAATTACCGAAGCAGCAGAGTGAACGGATGATAAAGG  >  NC_002947/5248487‑5248632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.