| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5634606 = | 44 (0.690) | 4 (0.070) | 4/236 | NT | 8.3% | intergenic (+182/+201) | putA/PP_5718 | proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein |
| ? | NC_002947 | 5634672 = | 47 (0.790) | intergenic (+248/+135) | putA/PP_5718 | proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein | |||||
CCCGATCCAACCCGCGCTTCCACTTGCCTTAATACGGTGGTGGCGGCAACAGTGAACGGCGGGTAGAAATTGGCCAGCAGGTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACACGACGGCCTGTGCATGTGTATAGGGGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5634761‑5634606‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaaGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGT > NC_002947/5634672‑5634819 CCCGATCCAACCCGCGCTTCCACTTGCCTTAATACGGTGGTGGCGGCAACAGTGAACGGCGGGTAGAAATTGGCCAGCAGGTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACACGACGGCCTGTGCATGTGTATAGGGGCGGGTTTAC > 1:400477/1‑149CCCGATCCAACCCGCGCTTCCACTTGCCTTAATACGGTGGTGGCGGCAACAGTGAACGGCGGGTAGAAATTGGCCAGCAGGTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACACGACGGCCTGTGCATGTGTATAGGGGCGGGTTTAC > 6:150122/1‑149 CCGATCCAACCCGCGCTTCCACTTGCCTTAATACGGTGGTGGCGGCAACAGTGAACGGCGGGTAGAAATTGGCCAGCAGGTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACACGACGGCCTGTGCATGTGTATAGGGGCGGGTTTACC > 7:264282/1‑149 GATCCAACCCGCGCTTCCACTTGCCTTAATACGGTGGTGGCGGCAACAGTGAACGACGGGTAGAAATTGTCCAGCAGGTCCGTCCTCTTCGCGGGTGAACCCGCTCCTACACGACGGCCTGAGCATGTGTATAGGGGC‑GGTTTACCCcg > 5:297329/1‑147 CGCGCTTCCACTTGCCTTAATACGGTGGTGGCGGCAACAGTGAACGGCGGGTAGAAATTGGCCAGCAGGTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACACGACGGCCTGTGCATGTGTATAGGGGCGGGTTTACC < 3:334011/138‑1 CGCGCTTCCACTTGCCTTAATACGGTGGTGGCGGCAACAGTGAACGGCGGGTAGAAATTGGCCAGCAGGTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACACGACGGCCTGTGCATGTGTATAGGGGCGGGTTTACC > 4:334011/1‑138 GGTGAACCCGCTCCTACACGACGGCCTGTGCATGTGTATAGGGGCGGGTTTACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGG > 5:138797/1‑124 GGTGAACCCGCTCCTACACGACGGCCTGTGCATGTGTATAGGGGCGGGTTTACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGG < 6:138797/124‑1 tctACCCTCTCCTACACGACGGGCTGTGCATGTGTATAGGGGCTGGTTTACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGG < 8:197633/145‑1 CCCGCTCCTACACGACGGCCTGTGCATGTGTATAGGGGCGGGTTTACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGG > 7:197633/1‑144 ACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAA > 7:17895/1‑149 GAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTG < 7:117699/149‑1 GAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTG < 8:17895/149‑1 GAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGA > 6:190409/1‑120 AGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGT < 5:103252/149‑1 AGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGT < 8:136890/149‑1 CCCGATCCAACCCGCGCTTCCACTTGCCTTAATACGGTGGTGGCGGCAACAGTGAACGGCGGGTAGAAATTGGCCAGCAGGTCCGGCCTCTTCGCGGGTGAACCCGCTCCTACACGACGGCCTGTGCATGTGTATAGGGGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5634761‑5634606‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaaGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGCGGGTTGGATCGGGGACTATCCGGAGCTCCCCTCAGACAGAGCTCCGGCCAAAAGTTGCTCAAACCATTGGT > NC_002947/5634672‑5634819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |