New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5634606 =	44 (0.690)	4 (0.070)	4/236	NT	8.3%	intergenic (+182/+201)	putA/PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
	?	NC_002947	5634672 =	47 (0.790)					intergenic (+248/+135)	putA/PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein

CGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGC  >  NC_002947/5634458‑5634748                                                                                                                                                     |                                                                                                                                               accaatggtttgagcaacttttggccggagctctgtctgaggggagctccggatagtccccgatccaacccgcgcttccacttgccttaatacggtggtggcggcaacagtgaacggcgggtagaaattggccagcaggtccggcctct                                                                                                                                                <  8:136890‑M1/1‑1 (MQ=255) accaatggtttgagcaacttttggccggagctctgtctgaggggagctccggatagtccccgatccaacccgcgcttccacttgccttaatacggtggtggcggcaacagtgaacggcgggtagaaattggccagcaggtccggcctct                                                                                                                                                <  5:103252‑M1/1‑1 (MQ=255)  ggCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTCATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCttt                                                                                                                                               <  2:233684/149‑1 (MQ=255)   caatggtttgagcaacttttggccggagctctgtctgaggggagctccggatagtccccgatccaacccgcgcttccacttgccttaatacggtggtggcggcaacagtgaacggcgggtagaaattggccagcaggtccggcctcTTc                                                                                                                                              <  7:117699‑M1/3‑1 (MQ=255)   caatggtttgagcaacttttggccggagctctgtctgaggggagctccggatagtccccgatccaacccgcgcttccacttgccttaatacggtggtggcggcaacagtgaacggcgggtagaaattggccagcaggtccggcctcTTc                                                                                                                                              <  8:17895‑M1/3‑1 (MQ=255)         tttgagcaacttttggccggagctctgtctgaggggagctccggatagtccccgatccaacccgcgcttccacttgccttaatacggtggtggcggcaacagtgaacggcgggtagaaattggccagcaggtccggcctcTTCGCGGGt                                                                                                                                        >  7:17895‑M1/141‑149 (MQ=255)          ttttttATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTcg                                                                                                                                             >  8:109839/1‑143 (MQ=255)          ttttttATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTcg                                                                                                                                             <  7:109839/143‑1 (MQ=255)              ttATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAAc                                                                                                                                    <  7:53962/148‑1 (MQ=255)                        aTGTCCTGACGCATGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCtata                                                                                                                         <  8:97058/149‑1 (MQ=255)                         tGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCtata                                                                                                                         >  6:370770/1‑148 (MQ=255)                            ccTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATAcaca                                                                                                                     >  1:124923/1‑149 (MQ=255)                             cTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACAt                                                                                                                    <  6:318458/149‑1 (MQ=255)                                tctgtctgaggggagctccggatagtccccgatccaacccgcgcttccacttgccttaatacggtggtggcggcaacagtgaacggcgggtagaaattggccagcaggtccggcctcTTc                                                                                                                                              >  6:190409‑M1/118‑120 (MQ=255)                                     ggggCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGc                                                                                                            >  3:253315/1‑149 (MQ=255)                                              cTAACAGGTGCTCACTAGAACGTGGTCTTGCCAAGGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTa                                                                                                   <  2:124923/149‑1 (MQ=255)                                              cTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTa                                                                                                   <  8:290386/149‑1 (MQ=255)                                                 aCAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAg                                                                                                  >  5:150122/1‑147 (MQ=255)                                                     gTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCtat                                                                                                                          >  7:19313/1‑119 (MQ=255)                                                     gTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCtat                                                                                                                          <  8:19313/119‑1 (MQ=255)                                                           cccgatccaacccgcgcttccacttgccttaatacggtggtggcggcaacagtgaacggcgggtagaaattggccagcaggtccggcctcTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCggg                                                                                           >  7:197633‑M1/91‑144 (MQ=255)                                                           cccgatccaacccgcgcttccacttgccttaatacggtggtggcggcaacagtgaacggcgggtagaaattggccagcaggtccggcctcTTCGCGGGTAAACCAGCCCCTATACACATGCACAGCCCGTCGTGTAGGAGAgggtaga                                                                                       <  8:197633‑M1/58‑4 (MQ=255)                                                            ccAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCAcc                                                                                     >  8:375107/1‑149 (MQ=255)                                                             cAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCAccc                                                                                    >  7:263607/1‑149 (MQ=255)                                                                aaCGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCcgcg                                                                                 <  7:285048/149‑1 (MQ=255)                                                                  cGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGaa                                                                               <  7:375107/149‑1 (MQ=255)                                                                   gTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGCAGCGGGTTCACCcgcg                                                                                 >  4:113308/1‑146 (MQ=255)                                                                          tGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCgg                                                                       <  1:58280/149‑1 (MQ=255)                                                                             cAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGc                                                                                                                                <  8:86952/89‑1 (MQ=255)                                                                             cAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGc                                                                                                                                >  7:86952/1‑89 (MQ=255)                                                                              aaCGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACct                                                                   >  3:144112/1‑149 (MQ=255)                                                                                   tGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACctgctg                                                               <  3:105994/148‑1 (MQ=255)                                                                                   tGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACctgctg                                                               >  4:105994/1‑148 (MQ=255)                                                                                     ccttaatacggtggtggcggcaacagtgaacggcgggtagaaattggccagcaggtccggcctcTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCAcc                                                                                     <  6:138797‑M1/60‑1 (MQ=255)                                                                                     ccttaatacggtggtggcggcaacagtgaacggcgggtagaaattggccagcaggtccggcctcTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCAcc                                                                                     >  5:138797‑M1/65‑124 (MQ=255)                                                                                         gggTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAag                                                                              >  8:392289/1‑127 (MQ=255)                                                                                         gggTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAag                                                                              <  7:392289/127‑1 (MQ=255)                                                                                           gtgtCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTc                                                      >  2:400477/1‑149 (MQ=255)                                                                                           gtgtCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACAC‑CCACAATAAACATTAACAAGCCGAGGTGTATGAACGGGTTAAACACGGAAGACGCAGGACCTGCTGGCCAAtt                                                        >  6:297329/1‑146 (MQ=255)                                                                                              tcttctGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTa                                                    <  8:263607/148‑1 (MQ=255)                                                                                                ttctGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTc                                                      >  7:182549/1‑144 (MQ=255)                                                                                                ttctGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTc                                                      <  8:182549/144‑1 (MQ=255)                                                                                                                 aTCCCCTGGAAATTCTCGGCTTCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTgcc                                 <  4:144112/148‑1 (MQ=255)                                                                                                                   ccccTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTc                                                      <  6:186578/125‑1 (MQ=255)                                                                                                                   ccccTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTc                                                      >  5:186578/1‑125 (MQ=255)                                                                                                                     ccTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGccac                            <  4:253315/149‑1 (MQ=255)                                                                                                                       tGGAAATTCTCGGCTGCCTGGGCCGGTCCTTACGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGccacca                          >  1:251923/1‑149 (MQ=255)                                                                                                                         gAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCa                                         >  6:253139/1‑132 (MQ=255)                                                                                                                         gAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCa                                         <  5:253139/132‑1 (MQ=255)                                                                                                                         gAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTgccgc                               >  6:247768/1‑142 (MQ=255)                                                                                                                         gAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTgccgc                               <  5:247768/142‑1 (MQ=255)                                                                                                                                tcGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTAtt                   >  4:235722/1‑147 (MQ=255)                                                                                                                                       ccTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGt          <  5:376484/149‑1 (MQ=255)                                                                                                                                         tGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTg         >  1:399014/1‑148 (MQ=255)                                                                                                                                            gCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTaa                 <  7:4776/137‑1 (MQ=255)                                                                                                                                            gCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTaa                 >  8:4776/1‑137 (MQ=255)                                                                                                                                               ggTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAgcgc  >  4:86035/1‑149 (MQ=255)                                                                                                                                                    tttCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                                          >  2:316579/1‑72 (MQ=255)                                                                                                                                                    tttCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                                          <  1:316579/72‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               CGGCTCTCCTTTTTTATGCGTGCATGTCCTGAAGCAGGGGCTGGACTAACAGGTGCTCACCAGAACGTGGTCATGCCAACGGTGACTTGGGTGTCTTCTGTTGTTACCGTTTATCCCCTGGAAATTCTCGGCTGCCTGGGCCGGTCCTTTCGCGGGTAAACCCGCCCCTATACACATGCACAGGCCGTCGTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGACCTGCTGGCCAATTTCTACCCGCCGTTCACTGTTGCCGCCACCACCGTATTAAGGCAAGTGGAAGCGC  >  NC_002947/5634458‑5634748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.