New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5816842	50 (0.780)	9 (0.150)	8/244	NT	21.2%	intergenic (+28/+101)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	= 5816927	19 (0.310)					intergenic (+113/+16)	PP_5092/pilT	NLP/P60 protein/twitching motility protein

ACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5816690‑5816842 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAA  <  NC_002947/5816927‑5816844                                                                                                                                                                                                                                                     ACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑G                                                                                          >  7:326829/1‑149     TCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCC                                                                                      >  2:362803/1‑149                                             AAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGATTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTATGTGAGCTGCG                                              <  8:326829/149‑1                                                      TGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTATGTGAGCTGAGCGCGAGAGC                                     >  1:396875/1‑149                                                                ACTAGGTGGGGGCAAAGCGGGTGCTGCCGAAATAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTTATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTATGTTAGCTGCGCGCGAGAGCGACGCGCTAC                           <  2:396875/149‑1                                                                  TACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCT                         >  6:382994/1‑149                                                                      TGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGG                     <  3:93544/149‑1                                                                          GGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGC                 <  5:382994/149‑1                                                                              AAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGA                   <  4:203662/149‑1                                                                              AAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCTGCAAAGGCCCTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGA                   <  4:28726/149‑1                                                                                         GCCGAAAGAGCAGCAGCGGAGTCTGGCCAAGCGTTACGCTGATCGGCGCTCTCCGGTCCC‑‑‑‑‑‑GGCCCCTTTGCGGGCGCGCCCGCTCCCACCGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAA  <  1:234702/149‑1                                                                                                                                                                                                                                                     ACGCTCCACGCCGTGGCAAGCGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACC‑‑‑‑‑‑GGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5816690‑5816842 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccTTTCGCGGGCGCGCCCGCTCCCACAGGTATGTGAGCTGCGCGCGAGAGCGACGCGCTACCTGTGGGAGCGGGCGTGCCCGCGAA  <  NC_002947/5816927‑5816844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.