| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5860423 = | 58 (0.910) | 4 (0.070) | 4/240 | NT | 6.8% | coding (1306/1725 nt) | PP_5136 | ABC transporter permease |
| ? | NC_002947 | 5860462 = | 54 (0.890) | coding (1267/1725 nt) | PP_5136 | ABC transporter permease | |||||
CCAGGGCCAACGCCTGCTCAACCATGCGCTGCGCCTGCTCAGCTTCATCCCCATGGCCGTGCCGGGCCTGGTACTGGGCCTGGGCTACGTATTCTTCTTCAACCTGAACGGCAACCCGCTGCATGTGCTGTACGGCGGCATGGGGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5860571‑5860423‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggttgcCGTTCAGGTTGAAGAAGAATACGTAGCCCAGGCCCAGTACCAGGCCCGGCACGGCCATGGGGATGAAGCTGAGCAGGCGCAGCGCATGGTTGAGCAGGCGTTGGCCCTGGGTCTTCTCCATCAGGTAGGCACCAGTGAAGATCACGA > NC_002947/5860462‑5860608 CCAGGGCCAACGCCTGCTCAACCATGCGCTGCGCCTGCTCAGCTTCATCCCCATGGCCGTGCCGGGCCTGGTACTGGGCCTGGGCTACGTATTCTTCTTCAACCTGAACGGCAACCCGCTGCATGTGCTGTACGGCGGCATGGGGTTGC > 7:213180/1‑149 TGAACGGCAACCCGCTGCATGTGCTGTACGGCGGCATGGGGTTGCCGTTCAGGTTGAAGAAGAATACGTAGCCCAGGCCCAGTACCAGGCCCGGCACGGCCATGGGGATGAAGCTGAGCAGGCGCAGCGCATGGTTGAGCAGGCGTTGG > 7:221036/1‑149 CCCGCTGCATGTGCTGTACGGCGGCATGGGGTTGCCGTTCAGGTTGAAGAAGAATACGTAGCCCAGGCCCAGTACCAGGCCCGGCACGGCCATGGGGATGAAGCTGA > 3:36887/1‑107 CCCGCTGCATGTGCTGTACGGCGGCATGGGGTTGCCGTTCAGGTTGAAGAAGAATACGTAGCCCAGGCCCAGTACCAGGCCCGGCACGGCCATGGGGATGAAGCTGA < 4:36887/107‑1 CGCTGCATGTGCTGTACGGCGGCATGGGGTTGCCGTTCAGGTTGAAGAAGAATACGTAGCCCAGGCCCAGTACCAGGCCCGGCACGGCCATGGGGATGAAGCTGAGCAGGCGCAGCGCATGGTTGAGCAGGCGTTGGCCCTGGGTCTTC < 8:221036/149‑1 GGGTTGCCGTTCAGGTTGAAGAAGAATACGTAGCCCAGGCCCAGTACCAGGCCCGGCACGGCCATGGGGATGAAGCTGAGCAGGCGCAGCGCATGGTTGAGCAGGCGTTGGCCCTGGGTCTTCTCCATCAGGTAGGCACCAGTGAAGAT < 2:347503/149‑1 GGGTTGCCGTTCAGGTTGAAGAAGAATACGTAGCCCAGGCCCAGTACCAGGCCCGGCACGGCCATGGGGATGAAGCTGAGCAGGCGCAGCGCATGGTTGAGCAGGCGTTGGCCCTGGGTCTTCTCCATCAGGTAGGCACCAGTG > 5:145000/1‑144 GTTGCCGTTCAGGTTGAAGAAGAATACGTAGCCCAGGCCCAGTACCAGGCCCGGCACGGCCATGGGGATGAAGCTGAGCAGGCGCAGCGCATGGTTGAGCAGGCGTTGGCCCTGGGTCTTCTCCATCAGGTA < 7:94092/132‑1 GTTGCCGTTCAGGTTGAAGAAGAATACGTAGCCCAGGCCCAGTACCAGGCCCGGCACGGCCATGGGGATGAAGCTGAGCAGGCGCAGCGCATGGTTGAGCAGGCGTTGGCCCTGGGTCTTCTCCATCAGGTA > 8:94092/1‑132 CCGTTCAGGTTGAAGAAGAATACGTAGCCCAGGCCCAGTACCAGGCCCGGCACGGCCATGGGGATGAAGCTGAGCAGGCGCAGCGCATGGTTGAGCAGGCGTTGGCCCTGGGTCTTCTCCATCAGGTAGGCACCAGTGAAGATCACGA < 6:164157/148‑1 CCAGGGCCAACGCCTGCTCAACCATGCGCTGCGCCTGCTCAGCTTCATCCCCATGGCCGTGCCGGGCCTGGTACTGGGCCTGGGCTACGTATTCTTCTTCAACCTGAACGGCAACCCGCTGCATGTGCTGTACGGCGGCATGGGGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5860571‑5860423‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggttgcCGTTCAGGTTGAAGAAGAATACGTAGCCCAGGCCCAGTACCAGGCCCGGCACGGCCATGGGGATGAAGCTGAGCAGGCGCAGCGCATGGTTGAGCAGGCGTTGGCCCTGGGTCTTCTCCATCAGGTAGGCACCAGTGAAGATCACGA > NC_002947/5860462‑5860608 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |