New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2505327 =	43 (0.670)	3 (0.050)	3/240	NT	7.5%	coding (1114/1146 nt)	yliI	aldose sugar dehydrogenase
	?	NC_002947	2505368 =	33 (0.550)					intergenic (+9/‑33)	yliI/PP_2199	aldose sugar dehydrogenase/hypothetical protein

CTGGCCACGCAGGAATTGATCCGCTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGACCCTGCCCAG  >  NC_002947/2505180‑2505472                                                                                                                                                    |                                                                                                                                                   aagggactggaagcaggcttgcaaggcctcgacgacgcgggcctgggcagggtcagcaacgtagccccgagtgctcagggcttgctggtagagggtttgggggtcgagggccatgccgcattctacccgactgtcaccctcggtgcagg                                                                                                                                                   >  4:16110‑M1/148‑149 (MQ=255)   gggactggaagcaggcttgcaaggcctcgacgacgcgggcctgggcagggtcagcaacgtagccccgagtgctcagggcttgctggtagagggtttgggggtcgagggccatgccgcattctacccgactgtcaccctcggtgcaGgcg                                                                                                                                                 <  7:7300‑M1/4‑1 (MQ=255)   gggactggaagcaggcttgcaaggcctcgacgacgcgggcctgggcagggtcagcaacgtagccccgagtgctcagggcttgctggtagagggtttgggggtcgagggccatgccgcattctacccgactgtcaccctcggtgcaGgcg                                                                                                                                                 <  5:3894‑M1/4‑1 (MQ=255)         gCAGGAATTGATCCGCTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTAc                                                                                                                                           <  3:122162/149‑1 (MQ=255)          cAGGAATTGATCCGCTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACt                                                                                                                                          <  6:51941/149‑1 (MQ=255)           aGGAATTGATCCGCTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTc                                                                                                                                         <  2:199893/149‑1 (MQ=255)                  gATCCGCTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGCTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCg                                                                                                                                  >  5:44504/1‑149 (MQ=255)                   aTCCGCTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCg                                                                                                                                  <  5:160378/148‑1 (MQ=255)                    tCCGCTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGc                                                                                                                                <  5:111459/149‑1 (MQ=255)                        cTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑gg                                                                                                                           <  1:315959/149‑1 (MQ=255)                        cTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGAATGGCGCGCTACTCAAGGTCGGCCT‑gg                                                                                                                           >  6:159133/1‑149 (MQ=255)                           gCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGGGGGTCCAGATGGTCACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGc                                                                                                                          <  4:303984/147‑1 (MQ=255)                            cAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGa                                                                                                                       <  6:257065/149‑1 (MQ=255)                             aaCTGGATGGCGACAAGGTGGTGTACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATg                                                                                                                                                    <  2:289001/120‑1 (MQ=255)                             aaCTGGATGGCGACAAGGTGGTGTACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATg                                                                                                                                                    >  1:289001/1‑120 (MQ=255)                             aaCTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGAATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGAc                                                                                                                      <  5:159133/149‑1 (MQ=255)                             aaCTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTACTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGAc                                                                                                                      >  2:167568/1‑149 (MQ=255)                                   aTGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGAcgc                                                                                                                >  4:117489/1‑149 (MQ=255)                                     ggCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGAcgcgc                                                                                                              >  3:153754/1‑149 (MQ=255)                                      cgggcctgggcagggtcagcaacgtagccccgagtgctcagggcttgctggtagagggtttgggggtcgagggccatgccgcattctacccgactgtcaccctcggtgcaGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGAcgcgcg                                                                                                             >  8:7300‑M1/111‑149 (MQ=255)                                       gggcctgggcagggtcagcaacgtagccccgagtgctcagggcttgctggtagagggtttgggggtcgagggccatgccgcattctacccgactgtcaccctcggtgcaGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACgcgcgc                                                                                                            >  7:101483‑M1/110‑149 (MQ=255)                                        gACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGcc                                                                                                           >  4:271707/1‑149 (MQ=255)                                        gACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGcc                                                                                                           >  2:218916/1‑149 (MQ=255)                                         gcctgggcagggtcagcaacgtagccccgagtgctcagggcgtgctggtagcgggtttggggggcgagggccatgccgcattctcaccgactgtcaccctcggtgcaGGCGCGCTACTCAAGGGCGGCCT‑GGCCGACTGACGCGCGCCt                                                                                                          >  7:269160‑M1/108‑149 (MQ=255)                                                   gCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAggg                                                                                                <  6:134003/149‑1 (MQ=255)                                                    cACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAggg                                                                                                <  3:271707/148‑1 (MQ=255)                                                    cACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGGGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGGCCGACTGACGCGCGCCTGCACCGAggg                                                                                                <  1:218916/149‑1 (MQ=255)                                                     aCGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCATCGAGGGt                                                                                               >  4:184618/1‑148 (MQ=255)                                                       gAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGa                                                                                             >  8:292649/1‑148 (MQ=255)                                                        aaGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACa                                                                                           <  5:212739/149‑1 (MQ=255)                                                             cGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCgg                                                                                      <  3:117489/149‑1 (MQ=255)                                                               gTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGt                                                                                               >  7:86710/1‑138 (MQ=255)                                                               gTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGt                                                                                               <  8:86710/138‑1 (MQ=255)                                                                       gTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCg                                                                            <  7:292649/149‑1 (MQ=255)                                                                                      gTATCCGTGATGTGCGGCTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGAcc                                                             <  6:44504/149‑1 (MQ=255)                                                                                            gTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCaaa                                                       >  6:33884/1‑149 (MQ=255)                                                                                             tGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAAc                                                      >  5:359501/1‑149 (MQ=255)                                                                                             tGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAAc                                                      <  6:359501/149‑1 (MQ=255)                                                                                             tGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAAc                                                      <  4:153754/149‑1 (MQ=255)                                                                                                          gggCCAGATGGTTACCTTTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCaa                                         <  8:122755/149‑1 (MQ=255)                                                                                                          gggCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCa                                          <  1:167568/148‑1 (MQ=255)                                                                                                                         cTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCATCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCgg                          <  3:184618/149‑1 (MQ=255)                                                                                                                         cTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGATGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCgg                          >  6:118626/1‑149 (MQ=255)                                                                                                                           gtatgtaCTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCgggg                        >  7:121117/1‑149 (MQ=255)                                                                                                                                   tGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTg                >  5:244039/1‑149 (MQ=255)                                                                                                                                      ccGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTg             <  5:33884/149‑1 (MQ=255)                                                                                                                                       cGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGa            >  7:130171/1‑149 (MQ=255)                                                                                                                                       cGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGa            <  8:121117/149‑1 (MQ=255)                                                                                                                                       cGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGa            >  5:45772/1‑149 (MQ=255)                                                                                                                                       cGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGa            >  5:51765/1‑149 (MQ=255)                                                                                                                                              aaGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGa                                                                                             <  2:354283/61‑1 (MQ=255)                                                                                                                                                ggATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGa                                  >  5:100417/1‑118 (MQ=255)                                                                                                                                                ggATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGa                                  <  6:100417/118‑1 (MQ=255)                                                                                                                                                 gATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGACCCTGCCCAg  >  3:303858/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CTGGCCACGCAGGAATTGATCCGCTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCT‑GGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGACCCTGCCCAG  >  NC_002947/2505180‑2505472

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.