New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2506599 = | 52 (0.810) | 4 (0.070) | 4/240 | NT | 7.6% | coding (79/582 nt) | PP_2200 | hypothetical protein |
? | NC_002947 | 2506640 = | 48 (0.790) | coding (120/582 nt) | PP_2200 | hypothetical protein |
CGTACCAGCGCACCCTGAGCCGGCTACGGGAGATGCAACTGCAACGCTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGTGGATTGGTTCTACCTGCATATGCTCGAGTGCGAGCAGCGCGGCGAGCAGCCC > NC_002947/2506452‑2506736 | cGTACCAGCGCACCCTGAGCCGGCTACGGGAGATGCAACTGCAACGCTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGgcctgcct < 7:99628/149‑1 (MQ=255) ggtggcaaacggctgttccgggtcgaaaaagcgttcgccgtcggcatcgggctgctcgccgcgctgctcgcactcgagcatatgcaggtagaaccaatccaccgtcagcaaatggttgagggtggccttgatcgacgggaagaagCTGc > 3:59235‑M1/146‑149 (MQ=255) gtggcaaacggctgttccgggtcgaaaaagcgttcgccgtcggcatcgggctgctcgccgcgctgctcgcactcgagcatatgcaggtagaaccaatccaccgtcagcaaatggttgagggtggccttgatcgacgggaagaagCTGc < 6:160949‑M1/4‑1 (MQ=255) gtggcaaacggctgttccgggtcgaaaaagcgttcgccgtcggcatcgggctgcccgccgcgctgctcgcactcgagcatatgcaggtagaaccaatccaccgtcagcaaatggttgagggtggccttgatcgacgggaagaagCTGc < 6:79552‑M1/4‑1 (MQ=255) aCCAGCGCACCCTGAGCCGGCTACGGGAGATGCAACTGCAACGCTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCctgcctgc > 6:92465/1‑148 (MQ=255) aCCAGCGCACCCTGAGCCGGCTACGGGAGATGCAACTGCAACGCTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCctgcctgc > 7:56996/1‑148 (MQ=255) gcgcACCCTGAGCCGGCTACGGGAGATGCAACTGCAACGCTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACt > 6:271788/1‑148 (MQ=255) gcACCCTGAGCCGGCTACGGGAGATGCAACTGCAACGCTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTg > 1:199935/1‑147 (MQ=255) gcACCCTGAGCCGGCTACGGGAGATGCAACTGCAACGCTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTg < 2:199935/147‑1 (MQ=255) cACCCTGAGCCGGCTACGGGAGATGCAACTGCAACGCTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGAcc < 5:341613/149‑1 (MQ=255) ccTGAGCCGGCTACGGGAGATGCAACTGCAACGCTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAg > 1:241157/1‑149 (MQ=255) gCCGGCTACGGGAGATGCAACTGCAACGCTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGa < 5:271788/149‑1 (MQ=255) gCTACGGGAGATGCAACTGCAACGCTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTtc < 8:199139/149‑1 (MQ=255) cGGGAGATGCAACTGCAACGCTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTtcgt < 8:56996/147‑1 (MQ=255) gagaTGCAACTGCAACGCTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGccc < 5:417440/149‑1 (MQ=255) gagaTGCAACTGCAACGCTTCGCCTGAAAAGGAGCCGACCATGCAGCAGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAATTGACCCAGGACGAGTTCGTCGccc > 2:258507/1‑149 (MQ=255) aTGCAACTGCAACGCTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAATTGACCCAGGACGAGTTCGTCGCCCcgc < 1:258507/149‑1 (MQ=255) aTGCAACTGCAACGCTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCcgc > 1:253950/1‑149 (MQ=255) caactgcaacGCTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGt < 5:92465/148‑1 (MQ=255) ccgtcggcatcgggctgctcgccgcgctgctcgcactcgagcatatgcaggtagaaccaatccaccgtcagcaaatggttgagggtggccttgatcgacgggaagaagCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAg < 6:119599‑M1/41‑1 (MQ=255) caacGCTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGct > 7:198217/1‑149 (MQ=255) catcgggctgctcgccgcgctgctcgcactcgagcatatgcaggtagaaccaatccaccgtcagcaaatggttgagggtggccttgatcgacgggaagaagCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCttcttc > 5:119599‑M1/102‑149 (MQ=255) cTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCTCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTTTACATGGCCTGCCTGCAACTGTCCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCttcttc < 2:237248/149‑1 (MQ=255) cTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACTATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCttcttc < 8:65872/149‑1 (MQ=255) ttCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTcc > 2:231746/1‑149 (MQ=255) gCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGt > 4:71409/1‑149 (MQ=255) ccTGATAAGGAGGCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCTGGCCTATAACTATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCGGTc < 2:376582/149‑1 (MQ=255) tGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGa > 8:27210/1‑149 (MQ=255) gAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGAt > 4:60818/1‑149 (MQ=255) tcgccgcgctgctcgcactcgagcatatgcaggtagaaccaatccaccgtcagcaaatggttgagggtggccttgatcgacgggaagaagCt > 6:296944‑M1/91‑92 (MQ=255) tcgccgcgctgctcgcactcgagcatatgcaggtagaaccaatccaccgtcagcaaatggttgagggtggccttgatcgacgggaagaagCt < 5:296944‑M1/2‑1 (MQ=255) aGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAg < 3:71409/149‑1 (MQ=255) aGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAg > 2:379484/1‑149 (MQ=255) cGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGcttc < 6:371135/128‑1 (MQ=255) cGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGctgc > 5:371135/1‑126 (MQ=255) cGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACAGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCGACCCTCAACCATTTGCTGACg > 8:86839/1‑149 (MQ=255) cATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGt > 8:148519/1‑149 (MQ=255) cATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGt < 3:272386/149‑1 (MQ=255) ttATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACGCTCAACCATTTGCTGACGGt > 5:164510/1‑147 (MQ=255) ttATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGt < 6:164510/147‑1 (MQ=255) tCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGTGGAt < 7:27210/148‑1 (MQ=255) tgctgACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGTGGATTgg > 4:194058/1‑149 (MQ=255) ctgACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGTGGATTGGtt > 7:325582/1‑149 (MQ=255) ccaatccaccgtcagcaaatggttgagggtggccttgatcgacgggaagaagCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGctt < 5:114640‑M1/44‑1 (MQ=255) ccaatccaccgtcagcaaatggttgagggtggccttgatcgacgggaagaagCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGctt > 6:114640‑M1/53‑96 (MQ=255) aCCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGTGGATTGGTTCt < 2:241157/148‑1 (MQ=255) ggCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGTGGATTGGTTCTACCTGc < 7:148519/149‑1 (MQ=255) ccTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGTGGATTGGTTCTACCTGCat < 1:379484/149‑1 (MQ=255) cTATAACAATGGCTGGGACAATCACAGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCCTCGCCCCGCGTTGCAGCTTCTTCACGTCGATCAAGGCCACCCTCAACAATTTGCTGACGGTGGATTCGATCTACCTGCata > 4:219637/1‑149 (MQ=255) tataACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGTGGATTGGTTCTACCTGCatat > 8:317192/1‑149 (MQ=255) aCAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGTGGATTGGTTCTACCTGCATATGCTc < 2:253950/149‑1 (MQ=255) cAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAg > 2:402821/1‑97 (MQ=255) cAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAg < 1:402821/97‑1 (MQ=255) aaTGGCTGGTGCAATCACCGCCTGTACAAGGCCTTCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGTGGATTGGTTCTACCTGCATATGCTCGa < 3:219637/149‑1 (MQ=255) gCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGa < 1:151130/109‑1 (MQ=255) gCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGa > 2:151130/1‑109 (MQ=255) ccAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGTGGATTGGTTCTACCTGCATATCCTCGAGTGCGagcag > 8:348468/1‑149 (MQ=255) cAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGTGGATTGGTTCTACCTGCATATGCTCGAGTGCGa > 5:116801/1‑144 (MQ=255) cAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGTGGATTGGTTCTACCTGCATATGCTCGAGTGCGa < 6:116801/144‑1 (MQ=255) aCCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGTGGATTGGTTCTACCTGCATATGCTCGAGTGCGAGCAGCgcggc > 5:160949/1‑149 (MQ=255) aCCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGTGGATTGGTTCTACCTGCATATGCTCGAGTGCGAGCAGCgcggc < 7:317192/149‑1 (MQ=255) cTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGTGGATTGGTTCTACCTGCATATGCTCGAGTGCGAGCAGCGCGGCGag > 2:181135/1‑147 (MQ=255) tACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGTGGATTGGTTCTACCTGCATATGCTCGAGTGCGAGCAGCGCGGCGagcagc < 8:198217/148‑1 (MQ=255) cAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGGGGATTGGTTCTACCTGCATATGCTCGAGTGCGAGCAGCGCGGCGAGCAGccc < 7:86839/148‑1 (MQ=255) | CGTACCAGCGCACCCTGAGCCGGCTACGGGAGATGCAACTGCAACGCTTCGCCTGAAAAGGAGCCGACCATGCAGCCGTTATCGCATTATCTGCTGACCCAGGCCTATAACAATGGCTGGGCCAATCACCGCCTGTACAAGGCCTGCCTGCAACTGACCCAGGACGAGTTCGTCGCCCCGCGTTGCAGCTTCTTCCCGTCGATCAAGGCCACCCTCAACCATTTGCTGACGGTGGATTGGTTCTACCTGCATATGCTCGAGTGCGAGCAGCGCGGCGAGCAGCCC > NC_002947/2506452‑2506736 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |