New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3717880 =	42 (0.660)	4 (0.070)	4/242	NT	9.3%	coding (713/792 nt)	paaG	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
	?	NC_002947	3717917 =	38 (0.620)					coding (676/792 nt)	paaG	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase

CGATACCGGCGCCCATGGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTTCATCA  >  NC_002947/3717732‑3718017                                                                                                                                                     |                                                                                                                                          gagcaatgggggctgatctaccgcgtggtggatgatgcagcgctgcgtgatgaagccctcaccctcgcccgccacctcgccgcccagcccacctacggcctgacactgatcaagcgcagcctcaatgccagtttcgacaatggttttga                                                                                                                                           >  2:320358‑M1/149‑149 (MQ=255) gagcaatgggggctgatctaccgcgtggtggatgatgcagcgctgcgtgatgaagacctaaccctcgcccgccacctcgccgcccagcccacctacggcctgacactgatcaagcgcagcctcaatgccagtttcgacaatggttttga                                                                                                                                           >  7:141530‑M1/149‑149 (MQ=255)  gATACCGGCGCCCATGGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAg                                                                                                                                          <  4:67169/149‑1 (MQ=255)   aTACCGGCGCCCATGGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAgg                                                                                                                                         >  5:6297/1‑149 (MQ=255)     aCCGGCGCCCATGGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGgcg                                                                                                                                       >  6:394943/1‑149 (MQ=255)       cGGCGCCCATGGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCt                                                                                                                                     >  3:63810/1‑149 (MQ=255)            cccATGGCGCCGGGACCGATCACCGGCACCTGCACATTGCTTGCGTGTGCGGCCATTTTCAGCGCCCCTTGTAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACTCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAgg                                                                                                                                <  6:269700/149‑1 (MQ=255)               aTGGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGTCCTGCCAGGCGCTGCAGGTcg                                                                                                                             <  4:194082/149‑1 (MQ=255)                  gcgcCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCgcgc                                                                                                                          <  8:265749/149‑1 (MQ=255)                      cGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCgctc                                                                                                                        >  5:83617/1‑147 (MQ=255)                        gCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCgctccagc                                                                                                                    <  6:83617/149‑1 (MQ=255)                            cGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCgctccagctc                                                                                                                  >  7:72696/1‑147 (MQ=255)                               gatgatgcagcgctgcgtgatgaagccctcaccctcgcccgccacctcgccgcccagcccacctacggcctgacactgatcaagcgcagcctcaatgccagtttcgacaatggttttgAGGCGCTGCAGGTCGCGCTccagctccagct                                                                                                             <  8:378912‑M1/31‑1 (MQ=255)                                   cGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTgcgc                                                                                                         >  1:370426/1‑149 (MQ=255)                                   cGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTgcgc                                                                                                         <  5:220012/149‑1 (MQ=255)                                     ccACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCt                                                                                                       <  6:163421/149‑1 (MQ=255)                                     ccACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCt                                                                                                       <  7:99882/149‑1 (MQ=255)                                          gctgcgtgatgaagccctcaccctcgcccgccacctcgccgcccagcccacctacggcctgacactgatcaagcgcagcctcaatgccagtttcgacaatggttttgAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCaaaa                                                                                                  >  7:378912‑M1/108‑149 (MQ=255)                                                          gTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTgg                                                                                  <  4:63810/149‑1 (MQ=255)                                                                ccATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCAtt                                                                              >  8:230180/1‑147 (MQ=255)                                                                   ttttCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGc                                                                         >  8:208170/1‑149 (MQ=255)                                                                      cgccacctcgccgcccagcccacctacggcctgacactgatcaagcgcagcctcaatgccagtttcgacaatggttttgAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTc                                                                                                      <  7:158689‑M1/38‑1 (MQ=255)                                                                      cgccacctcgccgcccagcccacctacggcctgacactgatcaagcgcagcctcaatgccagtttcgacaatggttttgAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTc                                                                                                      >  8:158689‑M1/80‑117 (MQ=255)                                                                         gcgcCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCt                                                                   >  3:248624/1‑149 (MQ=255)                                                                          cgcCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCtt                                                                  >  3:187774/1‑149 (MQ=255)                                                                            ccccTTGAAGGCTGGCGTGCGTTTGTTCATGAAGCCGTTCACGCCTTCGAGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCACCAGATCAAGCTGCGCCTCAAAACCATTGACGAAACTGGCATTGACGATGCGCTTg                                                                 >  6:221123/1‑148 (MQ=255)                                                                               cTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCa                                                             <  7:208170/149‑1 (MQ=255)                                                                                ttGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAg                                                            >  5:220685/1‑149 (MQ=255)                                                                                ttGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAg                                                            >  3:342048/1‑149 (MQ=255)                                                                                    aGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAgtgt                                                         >  5:265223/1‑148 (MQ=255)                                                                                      gCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAg                                                      >  8:185625/1‑149 (MQ=255)                                                                                       cTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAgg                                                     <  4:248624/149‑1 (MQ=255)                                                                                          gcgtgcgtTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGcc                                                   <  4:342048/148‑1 (MQ=255)                                                                                             tgcgtTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAg                                               >  8:93863/1‑149 (MQ=255)                                                                                               cgtTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGt                                             <  7:93863/149‑1 (MQ=255)                                                                                                gtTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGtg                                            <  7:185625/149‑1 (MQ=255)                                                                                                   tGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGtggg                                          <  2:370426/148‑1 (MQ=255)                                                                                                        aTGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGTCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGtgggctgggc                                    >  8:379084/1‑149 (MQ=255)                                                                                                        aTGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAgg                                                                          <  6:237988/111‑1 (MQ=255)                                                                                                        aTGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGtgggctggg                                     <  6:6297/148‑1 (MQ=255)                                                                                                          gAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGggcgg                                  >  7:15199/1‑149 (MQ=255)                                                                                                           aaGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGggcggc                                 <  5:394943/149‑1 (MQ=255)                                                                                                             ggCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGa                               <  4:187774/149‑1 (MQ=255)                                                                                                              gCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAg                              <  8:72696/149‑1 (MQ=255)                                                                                                                  gaaCGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGt                                                                                           >  8:337837/3‑84 (MQ=255)                                                                                                                   cACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTgg                          <  6:220685/148‑1 (MQ=255)                                                                                                                    aCGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGTCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTggc                         <  7:379084/148‑1 (MQ=255)                                                                                                                    aCGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTggcg                        <  1:257518/149‑1 (MQ=255)                                                                                                                    aCGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTggcg                        >  2:257518/1‑149 (MQ=255)                                                                                                                                         cTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTtcatc   <  7:230180/149‑1 (MQ=255)                                                                                                                                            cgcCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCCTTGAGGCTGCGCTTGATCAGTCTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTtcatca  <  5:289219/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                          CGATACCGGCGCCCATGGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTTCATCA  >  NC_002947/3717732‑3718017

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.