New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3717880 =	42 (0.660)	4 (0.070)	4/242	NT	9.3%	coding (713/792 nt)	paaG	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
	?	NC_002947	3717917 =	38 (0.620)					coding (676/792 nt)	paaG	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase

TGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTTCATCACGCAGCGCTGCATCATCCACCACGCGGTAGATCAGCCCCCATTGCTC  >  NC_002947/3717773‑3718064                                                                                                                                                 |                                                                                                                                                    gctgcgtgatgaagccctcaccctcgcccgccacctcgccgcccagcccacctacggcctgacactgatcaagcgcagcctcaatgccagtttcgacaatggttttgAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCaaaa                                                                                                                                                 >  7:378912‑M1/108‑149 (MQ=255)                 gTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTgg                                                                                                                                 <  4:63810/149‑1 (MQ=255)                       ccATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCAtt                                                                                                                             >  8:230180/1‑147 (MQ=255)                          ttttCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGc                                                                                                                        >  8:208170/1‑149 (MQ=255)                             cgccacctcgccgcccagcccacctacggcctgacactgatcaagcgcagcctcaatgccagtttcgacaatggttttgAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTc                                                                                                                                                     <  7:158689‑M1/38‑1 (MQ=255)                             cgccacctcgccgcccagcccacctacggcctgacactgatcaagcgcagcctcaatgccagtttcgacaatggttttgAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTc                                                                                                                                                     >  8:158689‑M1/80‑117 (MQ=255)                                gcgcCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCt                                                                                                                  >  3:248624/1‑149 (MQ=255)                                 cgcCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCtt                                                                                                                 >  3:187774/1‑149 (MQ=255)                                   ccccTTGAAGGCTGGCGTGCGTTTGTTCATGAAGCCGTTCACGCCTTCGAGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCACCAGATCAAGCTGCGCCTCAAAACCATTGACGAAACTGGCATTGACGATGCGCTTg                                                                                                                >  6:221123/1‑148 (MQ=255)                                      cTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCa                                                                                                            <  7:208170/149‑1 (MQ=255)                                       ttGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAg                                                                                                           >  5:220685/1‑149 (MQ=255)                                       ttGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAg                                                                                                           >  3:342048/1‑149 (MQ=255)                                           aGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAgtgt                                                                                                        >  5:265223/1‑148 (MQ=255)                                             gCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAg                                                                                                     >  8:185625/1‑149 (MQ=255)                                              cTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAgg                                                                                                    <  4:248624/149‑1 (MQ=255)                                                 gcgtgcgtTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGcc                                                                                                  <  4:342048/148‑1 (MQ=255)                                                    tgcgtTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAg                                                                                              >  8:93863/1‑149 (MQ=255)                                                      cgtTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGt                                                                                            <  7:93863/149‑1 (MQ=255)                                                       gtTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGtg                                                                                           <  7:185625/149‑1 (MQ=255)                                                          tGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGtggg                                                                                         <  2:370426/148‑1 (MQ=255)                                                               aTGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGTCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGtgggctgggc                                                                                   >  8:379084/1‑149 (MQ=255)                                                               aTGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAgg                                                                                                                         <  6:237988/111‑1 (MQ=255)                                                               aTGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGtgggctggg                                                                                    <  6:6297/148‑1 (MQ=255)                                                                 gAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGggcgg                                                                                 >  7:15199/1‑149 (MQ=255)                                                                  aaGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGggcggc                                                                                <  5:394943/149‑1 (MQ=255)                                                                    ggCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGa                                                                              <  4:187774/149‑1 (MQ=255)                                                                     gCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAg                                                                             <  8:72696/149‑1 (MQ=255)                                                                         gaaCGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGt                                                                                                                                          >  8:337837/3‑84 (MQ=255)                                                                          cACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTgg                                                                         <  6:220685/148‑1 (MQ=255)                                                                           aCGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGTCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTggc                                                                        <  7:379084/148‑1 (MQ=255)                                                                           aCGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTggcg                                                                       >  2:257518/1‑149 (MQ=255)                                                                           aCGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTggcg                                                                       <  1:257518/149‑1 (MQ=255)                                                                                                cTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTtcatc                                                  <  7:230180/149‑1 (MQ=255)                                                                                                   cgcCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCCTTGAGGCTGCGCTTGATCAGTCTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTtcatca                                                 <  5:289219/147‑1 (MQ=255)                                                                                                       ttttgaggcgcagctggagctggagcgcgacctgcagcgcctCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTTCATCACGCAgc                                           >  7:378912‑M2/43‑149 (MQ=255)                                                                                                           gaggcgcagctggagctggagcgcgacctgcagcgcctCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTggcg                                                                       <  7:158689‑M2/79‑1 (MQ=255)                                                                                                           gaggcgcagctggagctggagcgcgacctgcagcgcctCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTggcg                                                                       >  8:158689‑M2/39‑117 (MQ=255)                                                                                                                  agctggagctggagcgcgacctgcagcgcctCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTTCATCACGCAGCGCTGCatcatc                                <  8:378912‑M2/118‑1 (MQ=255)                                                                                                                     aGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTTCATCACGCAGCGCTGCATCATccac                             >  8:358843/1‑149 (MQ=255)                                                                                                                        tCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTtc                                                     >  4:336753/1‑122 (MQ=255)                                                                                                                        tCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTtc                                                     <  3:336753/122‑1 (MQ=255)                                                                                                                         cgcgCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTtc                                                     >  4:402973/1‑121 (MQ=255)                                                                                                                         cgcgCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTtc                                                     <  3:402973/121‑1 (MQ=255)                                                                                                                                   ctccagctGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTTCATCACGCAGCGCTGCATCATCCACCACGCGGTAGATCa               <  8:15199/149‑1 (MQ=255)                                                                                                                                   ctccagctGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTTCATCACGCAGCGCTGCATCATCCACCACGCGGTAGATCa               <  7:358843/149‑1 (MQ=255)                                                                                                                                      cagctGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCTTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTTCATCACGCAGCGCTGCATCATCCACCACGCGGTAGATCAGcc            <  6:265223/149‑1 (MQ=255)                                                                                                                                                tCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTTAGGTCTTCATCACGCAGCGCTGCATCATCCACCACGCGGTAGATCAGCCCCCATTGCTc  >  7:141530‑M2/2‑149 (MQ=255)                                                                                                                                                tCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTTCATCACGCAGCGCTGCATCATCCACCACGCGGTAGATCAGCCCCCATTGCTc  >  2:320358‑M2/2‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                    TGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGTCGCGCTCCAGCTCCAGCTGCGCCTCAAAACCATTGTCGAAACTGGCATTGAGGCTGCGCTTGATCAGTGTCAGGCCGTAGGTGGGCTGGGCGGCGAGGTGGCGGGCGAGGGTGAGGGCTTCATCACGCAGCGCTGCATCATCCACCACGCGGTAGATCAGCCCCCATTGCTC  >  NC_002947/3717773‑3718064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.