New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4704987 =	42 (0.660)	4 (0.070)	4/244	NT	9.7%	coding (177/1695 nt)	kdpA	potassium‑transporting ATPase subunit A
	?	NC_002947	4705011 =	34 (0.550)					coding (153/1695 nt)	kdpA	potassium‑transporting ATPase subunit A

GAACGCCAGTGACCATTCCTGGCCAGGCAGGTTCTGAGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGATGACAAAGAATGC  >  NC_002947/4704843‑4705133                                                                                                                                                    |                                                                                                                                                   gAACGCCAGTGACCATTCCTGGCCAGGCAGGTTCTGAGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTCGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCctggc                                                                                                                                                >  3:116036/1‑149 (MQ=255)  aaCGCCAGTGACCATTCCTGGCCAGGCAGGTTCTGAGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGACGCCAGTTCTGCTCctcgct                                                                                                                                               >  3:45438/1‑149 (MQ=255)    cGCCAGTGACCAATCCTGGCCAGGCAGGTTCTGAGGGTTCAGTGGCACGTAGCCCTGCAACAGCACCAAGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGACACG‑GTGTATAGCCGCCACTACTGCTCctggctgg                                                                                                                                             >  5:314727/1‑149 (MQ=255)      ccAGTGACCATTCCTGGCCAGGCAGGTTCTGAGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCg                                                                                                                                           <  7:109433/149‑1 (MQ=255)       cAGTGACCATTCCTGGCCAGGCAGGTTCTGAGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCgg                                                                                                                                          >  7:191491/1‑148 (MQ=255)        aGTGACCATTCCTGGCCAGGCAGGTTCTGAGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGtt                                                                                                                                         <  5:366003/149‑1 (MQ=255)           gACCATTCCTGGCAAGGCAGCTTCTGAGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGTGAACAGCAGCAGGAAGC‑‑CGACCACGTAGAACGCCAACAGGGCAAGG‑GATTATTGCCGACAGATATGCACCTTGCTGGCCTTca                                                                                                                                       >  4:82581/1‑148 (MQ=255)              cATTCCTGGCCAGGCAGGTTCTGAGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACAcc                                                                                                                                   >  2:374358/1‑149 (MQ=255)                      gCCAGGCAGGTTCTGAGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGcc                                                                                                                           >  1:135183/1‑149 (MQ=255)                        caggcaggTTCTGAGGGTTGAGGGGCAGGGAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAACC‑‑CGACCAGGTTGAACGCCCACAGGGCCAGGTGTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCg                                                                                                                          <  1:102077/149‑1 (MQ=255)                             aggTTCTGAGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACa                                                                                                                    <  2:285752/149‑1 (MQ=255)                                    gAGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGc                                                                                                             >  2:69596/1‑149 (MQ=255)                                     aGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCt                                                                                                            <  7:78252/149‑1 (MQ=255)                                             gTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGc                                                                                                                                >  4:59127/1‑121 (MQ=255)                                             gTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGc                                                                                                                                <  3:59127/121‑1 (MQ=255)                                                        cccTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAgg                                                                                         <  1:69596/149‑1 (MQ=255)                                                        cccTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAgg                                                                                         <  8:365620/149‑1 (MQ=255)                                                                 agcagcACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGc                                                                                  >  6:87939/1‑147 (MQ=255)                                                                            gAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGc                                                                     <  8:71888/149‑1 (MQ=255)                                                                                 gcagcagGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCTCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACTCTGGCCTTcc                                                                <  3:208823/149‑1 (MQ=255)                                                                                 gcagcagGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTcc                                                                <  2:135183/149‑1 (MQ=255)                                                                                  cagcagGAAGCTTCTACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTc                                                                 <  1:346588/149‑1 (MQ=255)                                                                                  cagcagGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCa                                                               >  2:277003/1‑149 (MQ=255)                                                                                       ggaaggccagcgtacctagctgacccctgtgctggggccggtcgagcagggctgttaccggCTGGCTGGCGTTCACACCCGCCa                                                                                                                              >  1:140348‑M1/62‑84 (MQ=255)                                                                                       ggaaggccagcgtacctagctgacccctgtgctggggccggtcgagcagggctgttaccggCTGGCTGGCGTTCACACCCGCCa                                                                                                                              <  2:140348‑M1/23‑1 (MQ=255)                                                                                       ggAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGAc                                                           <  6:213267/148‑1 (MQ=255)                                                                                       ggAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGAc                                                           >  5:213267/1‑148 (MQ=255)                                                                                        gAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCt                                                         >  1:309040/1‑149 (MQ=255)                                                                                            c‑‑cGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTgta                                                     <  5:87939/149‑1 (MQ=255)                                                                                            c‑‑cGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTg                                                       >  7:263069/1‑147 (MQ=255)                                                                                              cagcgtacctggctgacccctgtgctggggccggtcgagcagggctgttaccggCTGGCTGGCGTTCACACCCGcc                                                                                                                               <  5:404878‑M1/22‑1 (MQ=255)                                                                                              cagcgtacctggctgacccctgtgctggggccggtcgagcagggctgttaccggCTGGCTGGCGTTCACACCCGcc                                                                                                                               >  6:404878‑M1/55‑76 (MQ=255)                                                                                                gACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTgtag                                                    >  3:267050/1‑148 (MQ=255)                                                                                                          aaCGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGcc                                          <  1:277003/148‑1 (MQ=255)                                                                                                               cAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGc                                     >  8:104018/1‑148 (MQ=255)                                                                                                                aaCAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCa                                   <  4:267050/149‑1 (MQ=255)                                                                                                                 aCAGGGCTAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAg                                  <  2:309040/149‑1 (MQ=255)                                                                                                                        cAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCg                           <  4:116036/149‑1 (MQ=255)                                                                                                                          gg‑gTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGc                             <  8:301236/145‑1 (MQ=255)                                                                                                                          gg‑gTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGc                             >  7:301236/1‑145 (MQ=255)                                                                                                                           g‑gTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCgg                          >  7:101063/1‑147 (MQ=255)                                                                                                                           g‑gTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCgg                          >  3:179026/1‑147 (MQ=255)                                                                                                                           g‑gTGTATTGCCGCCAGTTCAGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGTGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTa                        <  3:82581/149‑1 (MQ=255)                                                                                                                                 aTTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTagcag                    >  2:318515/1‑148 (MQ=255)                                                                                                                                     ccgccAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGa               >  3:267631/1‑149 (MQ=255)                                                                                                                                            ttCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGATGACaaa        <  4:179026/149‑1 (MQ=255)                                                                                                                                              cTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGATGACAAAg       <  1:374358/148‑1 (MQ=255)                                                                                                                                                   ccTGGCTGGCGATCACAACCGCCAGCCGGTAACAGCCCTGCTCGACCCGCCCCACCACAGGGGTCAGCCAGGAACGCAGGCCTACCATGACCTAGTAGAAGAACCGCCCAAGCCAGGGTGCCGGTAGCAGCACGATGACAAAGAAtcc  >  6:25637/1‑146 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GAACGCCAGTGACCATTCCTGGCCAGGCAGGTTCTGAGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACCGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGATGACAAAGAATGC  >  NC_002947/4704843‑4705133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.