New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4704987 =	42 (0.660)	4 (0.070)	4/244	NT	9.7%	coding (177/1695 nt)	kdpA	potassium‑transporting ATPase subunit A
	?	NC_002947	4705011 =	34 (0.550)					coding (153/1695 nt)	kdpA	potassium‑transporting ATPase subunit A

GCCAGGCAGGTTCTGAGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGATGACAAAGAATGCCAAGAGCAAGGCGAAATCGTAACTG  >  NC_002947/4704864‑4705158                                                                                                                                                       |                                                                                                                                                     gCCAGGCAGGTTCTGAGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGcc                                                                                                                                                     >  1:135183/1‑149 (MQ=255)   caggcaggTTCTGAGGGTTGAGGGGCAGGGAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAACC‑‑CGACCAGGTTGAACGCCCACAGGGCCAGGTGTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCg                                                                                                                                                    <  1:102077/149‑1 (MQ=255)        aggTTCTGAGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACa                                                                                                                                              <  2:285752/149‑1 (MQ=255)               gAGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGc                                                                                                                                       >  2:69596/1‑149 (MQ=255)                aGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCt                                                                                                                                      <  7:78252/149‑1 (MQ=255)                                   cccTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAgg                                                                                                                  <  8:365620/149‑1 (MQ=255)                                   cccTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAgg                                                                                                                  <  1:69596/149‑1 (MQ=255)                                            agcagcACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGc                                                                                                           >  6:87939/1‑147 (MQ=255)                                                       gAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGc                                                                                              <  8:71888/149‑1 (MQ=255)                                                            gcagcagGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCTCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACTCTGGCCTTcc                                                                                         <  3:208823/149‑1 (MQ=255)                                                            gcagcagGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTcc                                                                                         <  2:135183/149‑1 (MQ=255)                                                             cagcagGAAGCTTCTACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTc                                                                                          <  1:346588/149‑1 (MQ=255)                                                             cagcagGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCa                                                                                        >  2:277003/1‑149 (MQ=255)                                                                  ggAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGAc                                                                                    <  6:213267/148‑1 (MQ=255)                                                                  ggAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGAc                                                                                    >  5:213267/1‑148 (MQ=255)                                                                   gAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCt                                                                                  >  1:309040/1‑149 (MQ=255)                                                                       c‑‑cGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTgta                                                                              <  5:87939/149‑1 (MQ=255)                                                                       c‑‑cGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTg                                                                                >  7:263069/1‑147 (MQ=255)                                                                           gACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTgtag                                                                             >  3:267050/1‑148 (MQ=255)                                                                                     aaCGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGcc                                                                   <  1:277003/148‑1 (MQ=255)                                                                                          cAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGc                                                              >  8:104018/1‑148 (MQ=255)                                                                                           aaCAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCa                                                            <  4:267050/149‑1 (MQ=255)                                                                                            aCAGGGCTAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAg                                                           <  2:309040/149‑1 (MQ=255)                                                                                                   cAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCg                                                    <  4:116036/149‑1 (MQ=255)                                                                                                     gg‑gTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGc                                                      <  8:301236/145‑1 (MQ=255)                                                                                                     gg‑gTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGc                                                      >  7:301236/1‑145 (MQ=255)                                                                                                      g‑gTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCgg                                                   >  3:179026/1‑147 (MQ=255)                                                                                                      g‑gTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCgg                                                   >  7:101063/1‑147 (MQ=255)                                                                                                      g‑gTGTATTGCCGCCAGTTCAGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGTGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTa                                                 <  3:82581/149‑1 (MQ=255)                                                                                                            aTTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTagcag                                             >  2:318515/1‑148 (MQ=255)                                                                                                                ccgccAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGa                                        >  3:267631/1‑149 (MQ=255)                                                                                                                       ttCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGATGACaaa                                 <  4:179026/149‑1 (MQ=255)                                                                                                                         cTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGATGACAAAg                                <  1:374358/148‑1 (MQ=255)                                                                                                                              ccTGGCTGGCGATCACAACCGCCAGCCGGTAACAGCCCTGCTCGACC‑CGCCCCACCACAGGGGTCAGCCAGGAACGCAGGCCTACCATGACCTAGTAGAAGAACCGCCCAAGCCAGGGTGCCGGTAGCAGCACGATGACAAAGAAtcc                           >  6:25637/1‑146 (MQ=255)                                                                                                                                tggcgggtgtgaacgccagccagCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCTAGGTACGCTGGCCTTcc                                                                                         >  1:140348‑M2/24‑84 (MQ=255)                                                                                                                                tggcgggtgtgaacgccagccagCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCTAGGTACGCTGGCCTTcc                                                                                         <  2:140348‑M2/61‑1 (MQ=255)                                                                                                                                 ggcgtttgTTCACACCAGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGTGTGCCGGTAGCAGCACGATGACAAAGAATGCCAag                       <  4:132023/142‑1 (MQ=255)                                                                                                                                 ggcgggtgtgaacgccagccagCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTg                                                                                                <  5:404878‑M2/54‑1 (MQ=255)                                                                                                                                 ggcgggtgtgaacgccagccagCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTg                                                                                                >  6:404878‑M2/23‑76 (MQ=255)                                                                                                                                       cGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGATGACAAAGAATGCCAAGAGCAAg                 <  8:263069/149‑1 (MQ=255)                                                                                                                                             cacCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGATGACAAAGAATGCCAAGAGCAAGGCGaaa           >  1:156011/1‑149 (MQ=255)                                                                                                                                              acCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGATGACAAAGAATGCCaa                        <  2:77947/135‑1 (MQ=255)                                                                                                                                              acCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGATGACAAAGAATGCCaa                        >  1:77947/1‑135 (MQ=255)                                                                                                                                              acCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGATGACAAAGAATGCCAAGAGCAAGGCGaaa           >  2:57866/1‑148 (MQ=255)                                                                                                                                              acCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGATGACAAAGAATGCCAAGAGCAAGGCGAAAt          >  3:103454/1‑149 (MQ=255)                                                                                                                                              acCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCAGAGCCAGGGTGCCGGTAGCAGCACGATGACAAAGAATGCCAAGAGCAAGGCGAAAt          >  8:69303/1‑149 (MQ=255)                                                                                                                                                ccGCCAGCCGGTAACAGCCCTGCTCGACCGGGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGATGACAAAGAATGCCAAGAGCAAGGCGAAATc         >  1:42243/1‑149 (MQ=255)                                                                                                                                                ccGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGATGACAAAGAATGCCAAGAGCAAGGCGAAATCg        >  2:296565/1‑149 (MQ=255)                                                                                                                                                       ccGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGATGACAAAGAATGCCAAGAGCAAGGCGAAATCGTAACtg  >  6:377243/1‑148 (MQ=255)                                                                                                                                                       |                                                                                                                                                     GCCAGGCAGGTTCTGAGGGTTGAGTGGCAGGTAGCCCTGCAACAGCAGCACGGCGAACAGCAGCAGGAAGC‑‑CGACCAGGTTGAACGCCAACAGGGCCAGG‑GTGTATTGCCGCCAGTTCTGCTCCTGGCTGGCGTTCACACCCGCCAGCCGGTAACAGCCCTGCTCGACC‑GGCCCCAGCACAGGGGTCAGCCAGGTACGCTGGCCTTCCATGACCTTGTAGTAGAACCGCCCGAGCCAGGGTGCCGGTAGCAGCACGATGACAAAGAATGCCAAGAGCAAGGCGAAATCGTAACTG  >  NC_002947/4704864‑4705158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.