New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4957290 =	69 (1.080)	6 (0.100)	4/246	NT	8.6%	coding (228/792 nt)	fliH	flagellar assembly protein FliH
	?	NC_002947	4957335 =	61 (0.980)					coding (183/792 nt)	fliH	flagellar assembly protein FliH

CTCGATCTGCGTGTCCTGCTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGTTCCGGGTCGAAGC  >  NC_002947/4957143‑4957438                                                                                                                                                    |                                                                                                                                                     cgtgcccgcgacctcgagggcgtggatgtgtggacgctgccaagcttcgacccggaaccggagcccgaaccggagcctgagcctgagcccgaggtcatcgaggaagtcgaggaagtgccgctggaagaagtccagccgttgaccctgg                                                                                                                                                      >  8:167391‑M1/148‑148 (MQ=255)    gATCTGCGTGTCCTGCTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGaa                                                                                                                                                    <  2:251521/147‑1 (MQ=255)     aTCTGCGTGTCCTGCTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGcc                                                                                                                                                 >  6:189083/1‑149 (MQ=255)     aTCTGCGTGTCCTGCTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGcc                                                                                                                                                 >  5:413015/1‑149 (MQ=255)           gtgtCCTGCTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGtt                                                                                                                                           <  6:9968/149‑1 (MQ=255)              tCCTGCTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGt                                                                                                                                         <  3:187419/148‑1 (MQ=255)                   cTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGcct                                                                                                                                   <  5:212104/149‑1 (MQ=255)                   cTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGcct                                                                                                                                   >  6:212104/1‑149 (MQ=255)                      gtggatgtgtggacgctgccaagcttcgacccggaaccggagcccgaaccggagcctgagcctgagcccgaggtcatcgaggaagtcgaggaagtgccgctggaagaagtccagccgttgaccctgGAAGCCCTCGTTGTAAGcctcct                                                                                                                                <  3:216105‑M1/23‑1 (MQ=255)                      ggCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGcctc                                                                                                                                  <  5:226987/147‑1 (MQ=255)                      ggCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACATTGAGGTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCATCGTTGTAAGcatccg                                                                                                                                >  8:255614/1‑148 (MQ=255)                         aaTCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGAc                                                                                                                             <  4:388916/149‑1 (MQ=255)                         aaTCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGAc                                                                                                                             >  8:18482/1‑149 (MQ=255)                             ggCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGAt                                                                                                                         <  2:44799/149‑1 (MQ=255)                                tCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGcctc                                                                                                                                  <  4:32398/137‑1 (MQ=255)                                tCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGcctc                                                                                                                                  >  3:32398/1‑137 (MQ=255)                                  cATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGt                                                                                                                                         <  7:242909/128‑1 (MQ=255)                                  cATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGt                                                                                                                                         >  8:242909/1‑128 (MQ=255)                                  cATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCtt                                                                                                                    >  5:334353/1‑149 (MQ=255)                                   aTCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTc                                                                                                                   <  4:333575/149‑1 (MQ=255)                                   aTCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTc                                                                                                                   <  3:391374/149‑1 (MQ=255)                                   aTCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTc                                                                                                                   <  5:361484/149‑1 (MQ=255)                                   aTCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTc                                                                                                                   >  8:153904/1‑149 (MQ=255)                                      aGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAg                                                                                                                <  2:148056/149‑1 (MQ=255)                                      aGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAg                                                                                                                <  3:119108/149‑1 (MQ=255)                                        gTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGc                                                                                                               >  8:312751/1‑148 (MQ=255)                                           ggCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGctct                                                                                                            <  7:255614/148‑1 (MQ=255)                                            gCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTc                                                                                                          <  4:372504/149‑1 (MQ=255)                                                tCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTaa                                                                                                                                       <  8:290326/116‑1 (MQ=255)                                                tCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTaa                                                                                                                                       >  7:290326/1‑116 (MQ=255)                                                tCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAgg                                                                                                      <  1:332161/149‑1 (MQ=255)                                                cgacccggaaccggagcccgaaccggagcctgagcctgagcccgaggtcatcgaggaagtcgaggaagtgccgctggaagaagtccagccgttgaccctgGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCa                                                                                                        >  1:226323‑M1/101‑147 (MQ=255)                                                cgacccggaaccggagcccgaaccggagcctgagcctgagcccgaggtcatcgaggaagtcgaggaagtgccgctggaagaagtccagccgttgaccctgGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCa                                                                                                        >  4:216105‑M1/101‑147 (MQ=255)                                                 gacccggaaccggagcccgaaccggagcctgagcctgagcccgaggtcatcgaggaagtcgaggaagtgccgctggaagaagtccagccgttgaccctgGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAggg                                                                                                     >  6:86961‑M1/100‑149 (MQ=255)                                                   gCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTAGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGt                                                                                                    >  7:134025/1‑148 (MQ=255)                                                    ccGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTc                                                                                                   >  1:156299/1‑148 (MQ=255)                                                      gCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGt                                                                                                                                         <  6:120863/108‑1 (MQ=255)                                                      gCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGt                                                                                                                                         >  5:120863/1‑108 (MQ=255)                                                        tCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATg                                                                                                                        <  4:349920/123‑1 (MQ=255)                                                        tCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATg                                                                                                                        >  3:349920/1‑123 (MQ=255)                                                         accggagcccgaaccggagcctgagcctgagcccgaggtcatcgaggaagtcgaggaagtgccgctggaagaagtccagccgttgaccctgGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCa                                                                                                        >  7:36632‑M1/92‑138 (MQ=255)                                                         accggagcccgaaccggagcctgagcctgagcccgaggtcatcgaggaagtcgaggaagtgccgctggaagaagtccagccgttgaccctgGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCa                                                                                                        <  8:36632‑M1/47‑1 (MQ=255)                                                                 tCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGActtc                                                                                     >  1:30805/1‑149 (MQ=255)                                                                           ttttCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTc                                                                                                                   >  1:358389/1‑109 (MQ=255)                                                                           ttttCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTc                                                                                                                   <  2:358389/109‑1 (MQ=255)                                                                                 gggCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCacttcc                                                                     >  3:305294/1‑149 (MQ=255)                                                                                 gggCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCacttcc                                                                     >  5:423598/1‑149 (MQ=255)                                                                                    ccTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCacttcctcg                                                                  <  6:413015/149‑1 (MQ=255)                                                                                       ctTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCacttcctcgact                                                               >  2:47717/1‑149 (MQ=255)                                                                                        ttCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCacttcctcgactt                                                              >  5:254247/1‑149 (MQ=255)                                                                                          cGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCacttcctcgact                                                               <  6:334353/146‑1 (MQ=255)                                                                                            gCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTc                                                                                                                   <  8:161129/92‑1 (MQ=255)                                                                                             cctcctGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCacttcctcgacttcctcg                                                         <  2:156299/149‑1 (MQ=255)                                                                                              ctcctGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCActtcctcgacttcctcga                                                        <  7:153904/149‑1 (MQ=255)                                                                                                 ctGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGa                                                     <  7:312751/149‑1 (MQ=255)                                                                                                    gCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCACCGCCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCt                                                  >  4:63928/1‑149 (MQ=255)                                                                                                      gAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTg                                                                                           >  6:178717/1‑106 (MQ=255)                                                                                                      gAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTg                                                                                           <  5:178717/106‑1 (MQ=255)                                                                                                               gCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGggctcaggc                                       <  7:18482/149‑1 (MQ=255)                                                                                                                   ggTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGggctcaggctca                                    <  4:305294/148‑1 (MQ=255)                                                                                                                       cTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCaggctcaggctc                               <  5:189083/149‑1 (MQ=255)                                                                                                                         gtgGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTc                                                                                                                   <  5:321156/63‑1 (MQ=255)                                                                                                                         gtgGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTc                                                                                                                   >  6:321156/1‑63 (MQ=255)                                                                                                                          tgGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCActtcctcgacttcctcga                                                        <  6:132546/121‑1 (MQ=255)                                                                                                                          tgGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCActtcctcgacttcctcga                                                        >  5:132546/1‑121 (MQ=255)                                                                                                                          tgGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCgg                            >  2:401908/1‑149 (MQ=255)                                                                                                                            gAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGtt                          >  3:379571/1‑149 (MQ=255)                                                                                                                             aaGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTc                         <  4:243078/149‑1 (MQ=255)                                                                                                                             aaGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTc                         <  1:47717/149‑1 (MQ=255)                                                                                                                             aaGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTc                         >  3:243078/1‑149 (MQ=255)                                                                                                                              aGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCg                        >  2:369828/1‑149 (MQ=255)                                                                                                                               gCCCTCGCGCTCACCGGTTGCGATGCCATCGTTGTAAGCCTCCTGACGGAGGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCTACTTCCTCTATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCgt                       <  8:197416/149‑2 (MQ=255)                                                                                                                                cccTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCggg                      <  2:107028/149‑1 (MQ=255)                                                                                                                                     gcgcTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCg                 >  5:10779/1‑149 (MQ=255)                                                                                                                                         tCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCacttcctcga                                                                 >  6:97215/1‑97 (MQ=255)                                                                                                                                         tCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGTTc             >  2:277192/1‑149 (MQ=255)                                                                                                                                            ccGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGTTCCgg          <  1:369828/149‑1 (MQ=255)                                                                                                                                                    GAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGTTCCGGGTCGAAGc  <  7:384787‑M1/149‑1 (MQ=255)                                                                                                                                                    GAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGTTCCGGGTCGAAGc  <  2:263943‑M1/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CTCGATCTGCGTGTCCTGCTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTTGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGTTCCGGGTCGAAGC  >  NC_002947/4957143‑4957438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.