| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5914184 | 30 (0.470) | 6 (0.120) | 5/198 | NT | 19.5% | intergenic (+76/+77) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase |
| ? | NC_002947 | = 5914224 | 26 (0.520) | intergenic (+116/+37) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase | |||||
GAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGC > NC_002947/5914043‑5914330 | gAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGt < 2:51687/149‑1 (MQ=255) gAAGAGTTTGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCATGACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAAttt > 1:102144/1‑149 (MQ=255) gAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAAttt < 5:273044/148‑1 (MQ=255) cGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGcc < 8:181093/148‑2 (MQ=255) gAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAgg > 5:51373/1‑132 (MQ=255) gAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAgg < 6:51373/132‑1 (MQ=255) cACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAg > 8:149740/1‑141 (MQ=255) cACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAg < 7:149740/141‑1 (MQ=255) cACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGc < 2:102144/149‑1 (MQ=255) cTCGATCTCCGACCTCGAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCt < 5:75041/149‑1 (MQ=255) tCGATCTCCGACGTCGAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCtg < 2:274405/149‑1 (MQ=255) ctcCGACCTCGAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCacaggtaagtcacaggcttcagccttcgaaat > 5:388181‑M1/1‑116 (MQ=255) cGACCTCGAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑c < 6:301744/149‑1 (MQ=255) cTCGAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCacaggtaagtcacaggcttcagccttcgaaattaccctgc < 1:74320‑M1/149‑41 (MQ=255) cTCGAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCtgt > 3:32035/1‑149 (MQ=255) tCGAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCa < 1:227132/111‑1 (MQ=255) tCGAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCa > 2:227132/1‑111 (MQ=255) gAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCacaggtaagtcacaggcttcagccttcgaaattaccctgcgg < 2:60815‑M1/148‑43 (MQ=255) gAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCacaggtaagtcacaggcttcagccttcgaaattaccctgcgg < 6:388181‑M1/148‑43 (MQ=255) gAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTgg > 4:32035‑M2/1‑146 (MQ=255) cAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTgggagcgg > 4:156805‑M2/1‑141 (MQ=255) aCTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTgggagcgggc > 4:370412‑M2/1‑139 (MQ=255) gTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTgggagcgggcgtg > 1:276710‑M2/1‑135 (MQ=255) gTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTgggagcgggcgt > 7:253159‑M2/1‑135 (MQ=255) aCCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTg > 8:341797/1‑106 (MQ=255) aCCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTg < 7:341797/106‑1 (MQ=255) aCGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑Ac < 2:50753/108‑1 (MQ=255) aCGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑Ac > 1:50753/1‑108 (MQ=255) aCGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCt > 3:142248/1‑114 (MQ=255) aCGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCt < 4:142248/114‑1 (MQ=255) aCGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTa > 5:211785/1‑149 (MQ=255) cTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCacaggtaagtcacaggcttcagccttcgaaattaccctgcggg > 6:109773‑M1/1‑61 (MQ=255) cTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCacaggtaagtcacaggcttcagccttcgaaattaccctgcggg < 5:109773‑M1/104‑44 (MQ=255) tttttGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGACGGCTGACGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTc < 6:211785/149‑1 (MQ=255) ttCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAgg < 5:113728/104‑1 (MQ=255) ttCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAgg > 6:113728/1‑104 (MQ=255) cgGGCAGGCCCGCCCCCGCTGGGTAATTTCTACGGCTCAAGCGGGTG‑AGTTA‑CATGGGGGAGCGGGGGTGCCGGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGccc < 7:2946/149‑1 (MQ=255) ggCACGCCCGCTCCCACA‑GGTAA‑GTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCcgc > 8:315393/1‑149 (MQ=14) gCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCtt > 4:226483/1‑114 (MQ=255) gCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCtt < 3:226483/114‑1 (MQ=255) cACGCCCGCTCCCacaggtaagtcacaggcttcagccttcgaaattaccctgcgggagcgggcgtgcccgcgaagagggcgacaccggtctcaaacaaaaacgccgcccttgaggggcggcgttttcgtttacacggtatgcaggtac > 1:276710‑M1/1‑13 (MQ=255) aCGCCCGCTCCCacaggtaagtcacaggcttcagccttcgaaattaccctgcgggagcgggcgtgcccgcgaagagggcgacaccggtctcaaacaaaaacgccgcccttgaggggcggcgttttcgtttacacggtatgcaggtac > 7:253159‑M1/1‑12 (MQ=255) aCGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATc > 4:89182/1‑110 (MQ=255) aCGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATc < 3:89182/110‑1 (MQ=255) gCCCGCTCCCacaggtaagtcacaggcttcagccttcgaaattaccctgcgggagcgggcgtgcccgcgaagagggcgacaccggtctcaaacaaaaacgccgcccttgaggggcggcgttttcgtttacacggtatgcaggtaccagt > 4:370412‑M1/1‑10 (MQ=255) ccGCTCCCacaggtaagtcacaggcttcagccttcgaaattaccctgcgggagcgggcgtgcccgcgaagagggcgacaccggtctcaaacaaaaacgccgcccttgaggggcggcgttttcgtttacacggtatgcaggtaccagttg > 4:156805‑M1/1‑8 (MQ=255) cGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGtt > 8:84106/1‑125 (MQ=255) cGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGtt < 7:84106/125‑1 (MQ=255) gCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCgg > 1:348225/1‑148 (MQ=255) cccGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTgggagcgggcgtgcccgcgaagagggcgacaccggtctcaaacaaaaacgccgcccttgag > 6:109773‑M2/1‑43 (MQ=255) cccGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTgggagcgggcgtgcccgcgaagagggcgacaccggtctcaaacaaaaacgccgcccttgag < 5:109773‑M2/104‑62 (MQ=255) ccacaggtaagtcacaggcttcagccttcgaaattaccctgcgggagcgggcgtgcccgcgaagagggcgacaccggtctcaaacaaaaacgccgcccttgaggggcggcgttttcgtttacacggtatgcaggtaccagttgtactc > 4:32035‑M1/1‑2 (MQ=255) ccGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTgggagcgggcgtgcccgcgaagagggcgacaccggtctcaaacaaaaacgccgcccttgaggggcggcgttttcgtttacacggtatgcaggtaccagttgtactc < 6:388181‑M2/148‑107 (MQ=255) ccGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTgggagcgggcgtgcccgcgaagagggcgacaccggtctcaaacaaaaacgccgcccttgaggggcggcgttttcgtttacacggtatgcaggtaccagttgtactc < 2:60815‑M2/148‑107 (MQ=255) | GAGCTGGAAGAGTTCGAGCACTCGATCTCCGACCTCGAGTACAACTGGTACCTGCAT‑ACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTG‑ACTTA‑CCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGC > NC_002947/5914043‑5914330 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |