| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1037793 | 44 (0.690) | 7 (0.130) | 7/208 | NT | 15.0% | intergenic (+38/+78) | PP_0896/PP_0897 | carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase |
| ? | NC_002947 | = 1037825 | 43 (0.820) | intergenic (+70/+46) | PP_0896/PP_0897 | carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase | |||||
GAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACG > NC_002947/1037678‑1037967 | gAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGt > 7:104818‑M2/1‑148 (MQ=255) aaGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGtg > 2:57720‑M2/1‑147 (MQ=255) aGTGCGGCTGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGtgg < 3:79261‑M2/149‑4 (MQ=255) tGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGtgggagcgggcttg > 1:324762‑M2/1‑135 (MQ=255) ggCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCCAAATACCCGGGCAACCCCCAGCCCAAATACGTAGCCTAATGGGTGGGGGGTTAGGTGT‑GGGGGCGGGGTTGccccgcaaaa > 2:168148/1‑141 (MQ=255) ggCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGGGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGtgggagcgggcttgcccgcgaa > 1:168148‑M2/1‑123 (MQ=255) cAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAgcc > 7:302819/1‑149 (MQ=255) gtgtTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCAGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAgccgcc > 2:84847/1‑149 (MQ=255) aCCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATTGGTAGCCTTCTGGCTTTCGCTGTACGTGT‑GGGAGCCGGCTTTCCCGCCAAGCACCCGCCGCAGt > 7:188260/1‑148 (MQ=255) cGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCa < 4:79261/149‑1 (MQ=255) ggCCGGTGCAGTTCGAGTGAGTCCTGTTTTTACTGGGGGGGCC‑TCTTCGCGGGCAAGCCCTCTCCAAATTGCGTAGCCTTCTGGCTTGGGCTTTACGTTT‑GTTAGCGGGTTTGCCCGCGAAGCAGCCGCCGCAGTTACATCa < 4:384733/142‑1 (MQ=255) ggCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCCTAGCCTTGTGGCTTGCGCTGTAAGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCCCCGCAGTTAAAtaa > 3:384733/1‑140 (MQ=255) gCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCC‑TCTTCGCGGGCAAACCCGCACCCCAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGATCGGGCATGACCGCGAAGCCGCCCCCGCAGTTACATCACGTTaca > 2:142729/1‑147 (MQ=255) ccGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTactt > 3:300418/1‑148 (MQ=255) gTTCGAGAGAGTCCTGTGATGACTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGAc > 1:150293/1‑149 (MQ=255) ttCGAGAGAGTCCTGTGATGACTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGtgggagcgggcttgcccgcga < 7:2344‑M2/109‑22 (MQ=255) ttCGAGAGAGTCCTGTGATGACTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGtgggagcgggcttgcccgcga > 8:2344‑M2/1‑88 (MQ=255) gagagaGTCCTGTGATGACTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCCCTTCGCCGGc > 6:418401/1‑148 (MQ=255) cTGTGATGACTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTactt < 5:383986/127‑1 (MQ=255) tgatgaCTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGc > 1:76244/1‑148 (MQ=255) gatgaCTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTac < 3:136810/121‑1 (MQ=255) gatgaCTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTac > 4:136810/1‑121 (MQ=255) tgtgGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGGTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGtt > 5:213008/1‑103 (MQ=255) tgtgGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGtt < 6:213008/103‑1 (MQ=255) c‑tctTCGCGGGCAAGCCCCCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTAACATCGACGGCCAGGCATTCGGCAATCTTGCTCTGCca > 4:57241/1‑147 (MQ=255) tctTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGc < 5:353213/144‑1 (MQ=255) tctTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGc > 6:353213/1‑144 (MQ=255) aaGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGtgggagcgggcttgcccgcgaagaggccgccacagtcatcacaggactctctcgaactgctccggccagtcccgccaggtaaacacctgcccttcccgcctcac < 2:43357‑M2/149‑105 (MQ=255) aaGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTactt < 5:236748/96‑1 (MQ=255) aaGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTactt > 6:236748/1‑96 (MQ=255) aaGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAgg < 4:149993/112‑1 (MQ=255) aaGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAgg > 3:149993/1‑112 (MQ=255) gCCCTCTCCCAAATGCTTAGCCTTCTG‑CTTGCGCTGTACGTGtgggagcgggcttgcccgcgaagaggccgccacagtcatcacaggactctctcgaactgctccggccagtcccgccagg > 7:173446‑M2/1‑42 (MQ=255) gCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGt > 3:397009/1‑148 (MQ=255) gCCCGCTCCCAAATGCGTAGCCTTCTG‑CTTGCGCTGTACGTGtgggagcgggcttgcccgcgaagaggccgccacagtcatcacaggactctctcgaactgctccggccagtcccgccagg < 8:173446‑M2/121‑80 (MQ=255) cccGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGa > 2:77142/1‑149 (MQ=255) ccGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGtgggagcgggcttgcccgcgaagcagccgccacagtcatcacaggactctctcgaactgctccggccagtcccgccaggtaaacacctgcccttcccgcctcacccgc < 8:116602‑M2/149‑109 (MQ=255) cGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGAtg < 2:76244/149‑1 (MQ=255) gCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGtgggagcgggcttgcccgcgaagaggccgccacagtcatcacaggactctctcgaactgctccggccagtcccgccaggtaaacacctgcccttcccgcctcacccgccg < 6:48244‑M2/149‑111 (MQ=255) cTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGAtgtg < 4:397009/149‑1 (MQ=255) ccAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTAc > 8:24647/1‑149 (MQ=255) ccAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTAc > 2:326497/1‑149 (MQ=255) ccAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTAc > 3:10719/1‑149 (MQ=255) cAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTAcc > 3:174230/1‑149 (MQ=255) aaaTGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTAcc > 4:76176/1‑148 (MQ=255) aaaTGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTAc > 7:380351/1‑147 (MQ=255) aaaTGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTAc < 8:380351/147‑1 (MQ=255) aaaTGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTAc > 8:103133/1‑147 (MQ=255) aaaTGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTAc < 7:103133/147‑1 (MQ=255) tGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGAtt < 7:24647/149‑1 (MQ=255) gCGTAGCCTTCTGGCTTGCGCTGTACGTGTGGGGACCGGCCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTAACTTCACTTCGACGGCCAGGCTTTCGGCAAACTTGCTCTGCCACAGGGCAGGGCAAGTCATGTGTACCGAt > 1:43081/1‑148 (MQ=255) cGTATCCTTCTGGCTTGCGCTGTACGTGtgggatcgggcttgcccgcgaagaggccgccacagtcatcacaggactctctcgaactgctccggccagtcccgccaggtaaacaccttgcccttcccgcctcacccgccgcacttcctc > 1:43357‑M2/1‑28 (MQ=255) aGCCTTCTGGCTTGCGCTGTACGTGtgggagcgggcttgcccgcgaagaggccgccacagtcatcacaggactctctcgaactgctccggccagtcccgccaggtaaacacctgcccttcccgcctcacccgccgcacttcctccaaa < 7:390263‑M2/148‑124 (MQ=255) gCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGt > 6:42053/1‑149 (MQ=255) cTTCTGGCTTGCGCTGTACGTGT‑GGGAGGGGGCTTGACCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTg < 8:302819/149‑1 (MQ=255) cTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTg < 1:326497/149‑1 (MQ=255) ttGCGCTGTTCGTGT‑GGGAGCGGGCGTGCACGCGAATGAGCAGGCGCAGTTAGATCAGGTTTCTTCTCTTGGAGGGCCAGGCTTTCTGCAATCTTTCTCTGCCACAGGGCAGGGCCAGTGAt < 6:242289/122‑1 (MQ=255) ttGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGATACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGAt > 5:242289/1‑122 (MQ=255) gTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACg > 4:251853/1‑149 (MQ=255) cGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCAcagggcagg < 7:190932/103‑1 (MQ=255) cGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCAcagggcagg > 8:190932/1‑103 (MQ=255) | GAAGTGCGGCGGGTGAGGCGGGAAGGGCAGGTGTTTACCTGGCGGGACTGGCCGGAGCAGTTCGAGAGAGTCCTGTGATGACTGTGGCGGCC‑TCTTCGCGGGCAAGCCCGCTCCCAAATGCGTAGCCTTCTGGCTTGCGCTGTACGTGT‑GGGAGCGGGCTTGCCCGCGAAGCAGCCGCCGCAGTTACATCAGGTTACTTCACTTCGACGGCCAGGCTTTCGGCAATCTTGCTCTGCCACAGGGCAGGGCCAGTGATGTGTACCGATTCACCGTTGCTGTCCACGGCGACG > NC_002947/1037678‑1037967 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |