New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1841476	46 (0.720)	6 (0.100)	5/238	NT	12.0%	coding (527/1029 nt)	ldhA	D‑lactate dehydrogenase
	?	NC_002947	= 1841502	45 (0.750)					coding (501/1029 nt)	ldhA	D‑lactate dehydrogenase

CTGATGATGCGGGCTTCGCGCAATAGCTCGGGCAGGGGCAGGTAGCGGGCGCCAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGATGCAGACGCCGGTTGAGTGCCAGGATGAGCGCCACGGCATGCT  >  NC_002947/1841359‑1841644                                                                                                                                                |                                                                                                                                               gtgttgatgCGGGCTTCGCGCAATAGCTCGGGCAGGGGCAGTTAGCGGGCGCCAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGcc                                                                                                                                           <  4:168966/145‑1 (MQ=255)  tgatgaTGCGGGCTTCGCGCAATAGCTCGGGCAGGGGCAGGTAGCGGGCGCCAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCtggccg                                                                                                                                          <  5:10099‑M2/149‑7 (MQ=255)    atgatgCGGGCTTCGCGCAATAGCTCGGGCAGGGGCAGGTAGCGGGCGCCAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCtggccg                                                                                                                                          >  5:25476‑M2/1‑141 (MQ=255)     tgatgCGGGCTTCGCGCAATAGCTCGGGCAGGGGCAGGTAGCGGGCGCCAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTa                                                                                                                                       >  5:239272/1‑149 (MQ=255)        tgCGGGCTTCGCGCAATAGCTCGGGCAGGGGCAGGTAGCGGGCGCCAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTAcc                                                                                                                                     >  4:82617/1‑148 (MQ=255)                    gcAATAGCTCGGGCAGGGGCAGGTAGCGGGCGCCAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACg                                                                                                                        >  3:121725/1‑149 (MQ=255)                                    gggcaggTAGCGGGCGCCAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCg                                                                                                               <  5:229541/142‑1 (MQ=255)                                    gggcaggTAGCGGGCGCCAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCg                                                                                                               >  6:229541/1‑142 (MQ=255)                                      gcaggTAGCGGGCGCCAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTc                                                                                                       >  8:328034/1‑148 (MQ=255)                                        aggTAGCGGGCGCCAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCg                                                                                                      >  4:308884/1‑147 (MQ=255)                                        aggTAGCGGGCGCCAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGaa                                                                                                    <  4:63840/149‑1 (MQ=255)                                              cGGGCGCCAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGt                                                                                              >  5:263990/1‑149 (MQ=255)                                                  cgcCAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGc                                                                                          >  6:322373/1‑149 (MQ=255)                                                   gcCAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGacca                                                                                                                                <  2:280072/110‑1 (MQ=255)                                                   gcCAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGacca                                                                                                                                >  1:280072/1‑110 (MQ=255)                                                    ccAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGccc                                                                                        >  3:261724/1‑149 (MQ=255)                                                     cAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCg                                                                                       >  8:147576/1‑149 (MQ=255)                                                      aaGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGt                                                                                      <  3:308884/149‑1 (MQ=255)                                                           ccAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAgg                                                                                 <  6:10099/149‑1 (MQ=255)                                                            cagcagCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAggg                                                                                >  7:245254/1‑149 (MQ=255)                                                            cagcagCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGACAGCCCGTGCAggg                                                                                >  2:20888/1‑149 (MQ=255)                                                               cagcTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTc                                                                                                       <  3:368652/123‑1 (MQ=255)                                                               cagcTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTc                                                                                                       >  4:368652/1‑123 (MQ=255)                                                                agcTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGaa                                                                            <  7:328034/149‑1 (MQ=255)                                                                  ctctGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGacca                                                                                                                                >  8:335634/1‑95 (MQ=255)                                                                  ctctGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGacca                                                                                                                                <  7:335634/95‑1 (MQ=255)                                                                      gggATGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCAcc                                                                      >  2:2599/1‑149 (MQ=255)                                                                        gTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAg                                                                           <  1:400243/142‑1 (MQ=255)                                                                        gTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAg                                                                           >  2:400243/1‑142 (MQ=255)                                                                             ggTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCgg                                                               <  3:82617/149‑1 (MQ=255)                                                                              gTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCggg                                                              >  5:362272/1‑149 (MQ=255)                                                                               tAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGt                                                             <  5:322373/149‑1 (MQ=255)                                                                                  gggTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCgg                                                               >  7:368710/1‑144 (MQ=255)                                                                                  gggTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCgg                                                               <  8:368710/144‑1 (MQ=255)                                                                                  gggTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATCATGCGAGCGAACGCGACCCCGATCTGGCCGGTACACACCACCCCGACGGTTTTCCCGAGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGGGGGTGCg                                                          >  6:211651/1‑149 (MQ=255)                                                                                       gTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGt                                                     <  6:239272/149‑1 (MQ=255)                                                                                        tAAGCGAGCAGCTGGCAGCCGATACCGGCCATGATTCGAGCGAAGGCGACCCCGTTCTGGCCGGTACCGACCTCCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTGAGCCCGTGCAGGGTGTAGTCACCTTCGCGGGTGCGGTTGTa                                                    <  5:211651/149‑1 (MQ=255)                                                                                                   cTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGAt                                            >  1:191871/1‑146 (MQ=255)                                                                                                   cTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGAt                                            <  2:191871/146‑1 (MQ=255)                                                                                                      gCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGATGCAGAc                                      >  2:132040/1‑149 (MQ=255)                                                                                                             aaaCCGGCCATGATGCGAGCGAAGGCGACCCCGATCtggccggtgtcggctgccagctgctggcttacgacccctaccccaacccagagctgctggcccttggcgcccgctacctgcccctgcccgagctattgcgcgaagcccgcat                                <  1:85329‑M2/148‑113 (MQ=255)                                                                                                                 cGGCCATGATGCGAGCGAAGGCGACCCCGATCtggccggtttcggctgccagctgctggcttacgacccctaccccaacccagagctgctggcccttggcgcccgctacctgcccctgcccgagc                                                   >  1:241190‑M2/1‑32 (MQ=255)                                                                                                                 cGGCCATGATGCGAGCGAAGGCGACCCCGATCtggccggtttcggctgccagctgctggcttacgacccctaccccaacccagagctgctggcccttggcgcccgctacctgcccctgcccgagc                                                   <  2:241190‑M2/125‑94 (MQ=255)                                                                                                                 cGGCCATGATGCGAGCGAAGGCGAACCCGATCtggccggtttcggctgccagctgctggcttacgacccctaccccaacccagagctgctggaccttggcgcccgctacctgcccctgcccgagctattgcgcgaagcccgcatcatca                           <  6:343650‑M2/149‑118 (MQ=255)                                                                                                                   gCCATGATGCGAGCGAAGGCGACCCCGATCtggccggtttcggctgccagctgctggcttacgacccctaccccaacccagagctgctggcccttggcgcccgctacctgcccctgcccgagctattgcgcgaagcccgcatcatcagc                         <  6:101036‑M2/149‑120 (MQ=255)                                                                                                                   gCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGATGCAGACGCCGGTTGAGTGc                         >  7:223282/1‑149 (MQ=255)                                                                                                                      atgatgCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGCTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGATGCAGACGCCGGTTGAGTGCCAg                      >  2:391502/1‑149 (MQ=255)                                                                                                                       tgatgCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGATGCAGACGCCGGTTGAGTGCCAgg                     <  8:223282/149‑1 (MQ=255)                                                                                                                       tgatgCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGATGCAGACGCCGGTTGAGTGCCAgg                     <  4:121725/149‑1 (MQ=255)                                                                                                                          tgCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGATGCAGACGCCGGTTGAGTGCCAGGAt                   <  6:362272/148‑1 (MQ=255)                                                                                                                            cgagcgaAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGccc                                                                                        <  5:325337/77‑1 (MQ=255)                                                                                                                            cgagcgaAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGccc                                                                                        >  6:325337/1‑77 (MQ=255)                                                                                                                             gagcgaAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGATGCAGACGCCGGTTGAGTGCCAGGATGAgc               <  1:2599/149‑1 (MQ=255)                                                                                                                                   aGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTg                                                                              >  4:371666/1‑80 (MQ=255)                                                                                                                                       gACCCCGATCtggccggtttcggctgccagctgctggcttacgacccctaccccaacccagagctgctggcccttggcgcccgctacctgcccctgcccgagctattgcgcgaagcccgcatcatcagcctgcactgcccactgaccga     >  5:101036‑M2/1‑10 (MQ=255)                                                                                                                                          cccGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGATGCAGACGCCGGTTGAGTGCCAGGATGAGCGCCACGGCATGCt  >  1:177342/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                               CTGATGATGCGGGCTTCGCGCAATAGCTCGGGCAGGGGCAGGTAGCGGGCGCCAAGGGCCAGCAGCTCTGGGTTGGGGTAGGGGTCGTAAGCCAGCAGCTGGCAGCCGAAACCGGCCATGATGCGAGCGAAGGCGACCCCGATCTGGCCGGTACCGACCACCCCGACGGTTTTCCCGTGCAGGTCGAAGCCGGTCAGCCCGTGCAGGGTGAAGTCACCTTCGCGGGTGCGGTTGTAGGCCCGATGCAGACGCCGGTTGAGTGCCAGGATGAGCGCCACGGCATGCT  >  NC_002947/1841359‑1841644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.