New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1855815	46 (0.720)	3 (0.050)	3/244	NT	6.2%	coding (827/1341 nt)	PP_1659	hypothetical protein
	?	NC_002947	= 1855848	47 (0.760)					coding (860/1341 nt)	PP_1659	hypothetical protein

AACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCTCGCAGATCGTGCGTGAAATTC  >  NC_002947/1855700‑1855988                                                                                                                                                      |                                                                                                                                             aaagCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGaaaa                                                                                                                                              <  8:169892/146‑1 (MQ=255) aaCGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGaaaa                                                                                                                                              <  6:298467/149‑1 (MQ=255)   cGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAga                                                                                                                                            >  4:249854‑M2/1‑147 (MQ=255)      cGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAgacca                                                                                                                                         <  7:232165‑M2/149‑6 (MQ=255)               cAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATg                                                                                                                                 >  4:27319/1‑148 (MQ=255)                aaGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGaa                                                                                                                               <  6:243007/149‑1 (MQ=255)                  gggggCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAAc                                                                                                                              >  8:151701/1‑148 (MQ=255)                         gTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCaa                                                                                                                      <  3:248035/149‑1 (MQ=255)                            atgccggAGTCGTGCAATGCGCAGAAGTGCGGGTTGGTTGGCCTGCAGTTCGTGCAGAAGACGGAAGGCGGTCCTCAGTGGGTATGGTCGACGTTGGAGGTGG‑TGCGCTACGTGCCGGTAAAGACCACGCCATTGATCGAGCGCTAgg                                                                                                                    <  6:106764/142‑1 (MQ=255)                               cccGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGcc                                                                                                                >  7:348579/1‑149 (MQ=255)                                   aGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTAc                                                                                                            <  7:151701/149‑1 (MQ=255)                                   aGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTAc                                                                                                            <  8:232165/149‑1 (MQ=255)                                        tGCAATGCGCATAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGACCGCAAGCGGCCCTACCTga                                                                                                        >  2:243662/1‑147 (MQ=255)                                        tGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGtt                                                                                                       <  3:27319/149‑1 (MQ=255)                                         gCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTc                                                                                                      >  1:77157/1‑149 (MQ=255)                                            aTGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACTTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGCGCCATACCtcttctcc                                                                                                   >  8:175353/1‑147 (MQ=255)                                               cgcAGAAGGTCGGGCTGTTATGCCTGCACATCGTGCACAAGACCGAAGTCGCACCTCAGTGGGTATGGTCGACGATCTATCACG‑TTAGCAAATTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTacga                                                                                                 <  8:1995/148‑1 (MQ=255)                                                        tCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGc                                                                                                                                      >  8:98846/1‑102 (MQ=255)                                                        tCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGc                                                                                                                                      <  7:98846/102‑1 (MQ=255)                                                            gCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCg                                                                                   >  7:109336/1‑149 (MQ=255)                                                                   ggCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGcc                                                                             <  1:243662/148‑1 (MQ=255)                                                                       tGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGt                                                                         >  2:187352/1‑148 (MQ=255)                                                                         cacaTCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGCTGaa                                                                      >  8:88944/1‑149 (MQ=255)                                                                          acaTCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGt                                                                                                        >  7:261616/1‑114 (MQ=255)                                                                          acaTCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGt                                                                                                        <  8:261616/114‑1 (MQ=255)                                                                             tCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGa                                                                                                                            <  5:213463/91‑1 (MQ=255)                                                                             tCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGa                                                                                                                            >  6:213463/1‑91 (MQ=255)                                                                              cGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAgc                                                                 >  7:283674/1‑149 (MQ=255)                                                                                   acaAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGccgccc                                                            >  4:206883/1‑149 (MQ=255)                                                                                    caAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAAc                                                                     >  7:42754/1‑139 (MQ=255)                                                                                    caAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAAc                                                                     <  8:42754/139‑1 (MQ=255)                                                                                          cGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTac                                                                                                   <  2:301563/103‑1 (MQ=255)                                                                                          cGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTac                                                                                                   >  1:301563/1‑103 (MQ=255)                                                                                             aGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCACAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGt                                                  <  6:354479/149‑1 (MQ=255)                                                                                                  cACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGAc                                             <  8:283674/149‑1 (MQ=255)                                                                                                     cTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCg                                          >  6:71296/1‑149 (MQ=255)                                                                                                     cTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGAGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCg                                          >  1:70500/1‑149 (MQ=255)                                                                                                       cAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTc                                        <  3:118612/149‑1 (MQ=255)                                                                                                             gTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAgaccatacccactgaggtgcgccttcggtcttgtgcacgatgtgcaggcctaccagcccgaccttctgcgcattgcacgactcggggatcaccgcccccttgttcg                                    <  7:46269‑M2/147‑107 (MQ=255)                                                                                                             gTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAgaccatacccactgaggtgcgccttcggtcttgtgcacgatgtgcaggcctaccagcccgaccttctgcgcattgcacgactcggggatcaccgcccccttgttcg                                    >  8:46269‑M2/1‑41 (MQ=255)                                                                                                             gTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCgaagaa                                  <  5:86199/149‑1 (MQ=255)                                                                                                               aTGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGt                                         >  4:56157/1‑140 (MQ=255)                                                                                                               aTGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGt                                         <  3:56157/140‑1 (MQ=255)                                                                                                                tGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGc                               <  8:109336/149‑1 (MQ=255)                                                                                                                  gTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGcc                              <  1:187352/148‑1 (MQ=255)                                                                                                                   tCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAATGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGCAGGCCAt                            >  6:58727/1‑149 (MQ=255)                                                                                                                   tCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCAt                            <  2:77157/149‑1 (MQ=255)                                                                                                                        gTTCGAGCACG‑TGCGCAACGTGCCGGAAAAgaccatacccactgaggtgcgccttcggtcttgtgcacgatgtgcaggcctaccagcccgaccttctgcgcattgcacgactcggggatcaccgcccccttgttcgggtcggcgttgcc                       <  1:298802‑M2/149‑120 (MQ=255)                                                                                                                        gTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCt                       >  4:185506/1‑149 (MQ=255)                                                                                                                            gAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCTCg                     >  3:148886/1‑147 (MQ=255)                                                                                                                            cggCACGTTGCGC‑ACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCTCg                     >  2:6698/3‑147 (MQ=255)                                                                                                                                aCG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCTCGCAGATc               <  3:185506/149‑1 (MQ=255)                                                                                                                                         aaCGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCTCGCAGATcgtgcgtg        >  6:231986/1‑148 (MQ=255)                                                                                                                                            gTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCTCGCAGATCGTGCGTGAAAt    >  7:43951/1‑149 (MQ=255)                                                                                                                                             tGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCTGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCTCGCAGATCGTGCGTGAAAtt   >  8:98328/1‑149 (MQ=255)                                                                                                                                              gCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCTCGCAGATCGTGCGTGAAATTc  >  7:20683/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                             AACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACG‑TGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCTCGCAGATCGTGCGTGAAATTC  >  NC_002947/1855700‑1855988

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.