| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2260171 = | 68 (1.060) | 4 (0.070) | 4/244 | NT | 6.6% | coding (759/2736 nt) | fimV | motility protein FimV |
| ? | NC_002947 | 2260221 = | 47 (0.760) | coding (809/2736 nt) | fimV | motility protein FimV | |||||
AACCGCGAGGTGGCCGAGCAGTATGCGGCCTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCG > NC_002947/2260073‑2260368 | ttcttcgttgtcgcgacggctggtgtccaggctttcctgggccatggccagctcgtcattcaacgccttggcctggcctgcaccggcctggttgcccgGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGccc > 1:388516‑M1/99‑149 (MQ=255) ccGCGAGGTGGCCGAGCAGTATGCGGCCTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCgg > 8:19931/1‑149 (MQ=255) cgcgAGGTGGCCGAGCAGTATGCGGCCTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCggg > 8:363728/1‑149 (MQ=255) ttgtcgcgacggctggtgtccaggctttcctgggccatggccagctcgtcattcaacgccttggcctggcctgcaccggcctggttgcccgGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCgg > 2:219327‑M1/92‑144 (MQ=255) ttgtcgcgacggctggtgtccaggctgtcctgggccatggccagctcgtcattcaacgccttggcctggcctgcaccggcctggttgcccgGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCgg < 1:219327‑M1/53‑1 (MQ=255) gTGGCCGAGCAGTATGCGGCCTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCa < 5:249130/149‑1 (MQ=255) tGGCCGAGCAGTATGCGGCCTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAg < 4:177493/149‑1 (MQ=255) gCCGAGCAGTATGCGGCCTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCAGCGCCTGGTCAGCCCGGGCAACCAgg < 3:261483/148‑1 (MQ=255) aGCAGTATGCGGCCTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGt < 2:237770/149‑1 (MQ=255) ccTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCaggccaggcc < 2:269340/149‑1 (MQ=255) gCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAgg < 6:144643/149‑1 (MQ=255) gCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAg < 7:307014/148‑1 (MQ=255) gCGTGAAGGCCGGCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCACGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAg < 5:288508/148‑1 (MQ=255) cGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGc < 4:205165/149‑1 (MQ=255) tGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGt < 3:194205/149‑1 (MQ=255) gAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGtt < 8:274761/149‑1 (MQ=255) gAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGtt > 5:54721/1‑149 (MQ=255) cGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGa > 8:33581/1‑149 (MQ=255) gggACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGcag > 7:77225/1‑119 (MQ=255) gggACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGcag < 8:77225/119‑1 (MQ=255) ggACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGAGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTg < 5:10769/147‑1 (MQ=255) cgTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCgg < 1:324892/107‑1 (MQ=255) cgTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCgg > 2:324892/1‑107 (MQ=255) gTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGcaggccaggc > 3:249204/1‑118 (MQ=255) gTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGcaggccaggc < 4:249204/118‑1 (MQ=255) tGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGcc > 1:130610/1‑148 (MQ=255) gCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGcc > 3:178915/1‑147 (MQ=255) cccGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAg < 7:19931/149‑1 (MQ=255) cAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGa < 6:365594/128‑1 (MQ=255) cAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGa > 5:365594/1‑128 (MQ=255) aGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGTCCCAGGAAAGc < 6:54721/149‑1 (MQ=255) aGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGc > 7:276138/1‑149 (MQ=255) gCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGcc > 3:5539/1‑149 (MQ=255) cTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCt < 7:363728/149‑1 (MQ=255) cTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCt < 4:178915/149‑1 (MQ=255) gATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTg < 7:33581/147‑1 (MQ=255) gATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTg < 2:130610/147‑1 (MQ=255) gATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTg < 3:329213/147‑1 (MQ=255) gCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGt > 8:148911/1‑149 (MQ=255) ccGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATg > 8:335002/1‑121 (MQ=255) ccGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATg < 7:335002/121‑1 (MQ=255) ccGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTc < 8:182296/149‑1 (MQ=255) cgccgAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACg < 5:104386/149‑1 (MQ=255) ccgggctgaccaggcgcaggttgtcgccctgggcgatacgcgacggtgcagccCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGACAGCCTGGACACCAGCCGTCGCGACaa < 1:219327‑M2/91‑1 (MQ=255) ccgggctgaccaggcgcaggttgtcgccctgggcgatacgcgacggtgcagccCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACaa > 2:219327‑M2/54‑144 (MQ=255) gggctgaccaggcgcaggttgtcgccctgggcgatacgcgacggtgcagccCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACgaagaa > 1:388516‑M2/52‑149 (MQ=255) GGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAAc > 4:317703‑M1/1‑149 (MQ=255) aCCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGaaaa < 7:148911/149‑1 (MQ=255) aCCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGaaaa < 4:5539/149‑1 (MQ=255) tCGGCCAGGGCGACAACCTGCGCCTGTTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCTTGGCCCAGGAAAGGGTGGACACCAGCCGTCGCGACAAc < 7:167102/125‑1 (MQ=255) gCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGa > 6:412001/1‑149 (MQ=255) ccAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAg < 8:334642/91‑1 (MQ=255) ccAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAg > 7:334642/1‑91 (MQ=255) gggCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTg > 1:396327/1‑148 (MQ=255) cGACAACCTGCGCCTGGGCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCaga < 3:63987/149‑1 (MQ=255) aCAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGc > 2:11618/1‑149 (MQ=255) cgcgacggtgcagccCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTg < 2:388516‑M2/134‑1 (MQ=255) tGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAg > 3:297521/1‑149 (MQ=255) ccCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAgc > 7:37811‑M2/3‑149 (MQ=255) ccCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAgc < 5:412001‑M2/147‑1 (MQ=255) cCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGATCTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAgcg > 5:319608‑M2/2‑149 (MQ=255) | AACCGCGAGGTGGCCGAGCAGTATGCGGCCTGGCGTGAAGGCCGTCGCCTGGGACCGCGTGCCCGCCAGCTGGATGCCACTCGCCGTGGCGCCGCCGAGGCTGCACCGTCGCGTATCGCCCAGGGCGACAACCTGCGCCTGGTCAGCCCGGGCAACCAGGCCGGTGCAGGCCAGGCCAAGGCGTTGAATGACGAGCTGGCCATGGCCCAGGAAAGCCTGGACACCAGCCGTCGCGACAACGAAGAACTGAAAAGCCGCATGGCCGACCTGCAGAGCCAGCTGGACAAGCTGCAGCG > NC_002947/2260073‑2260368 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |