New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2295789 =	51 (0.800)	4 (0.070)	4/234	NT	8.5%	intergenic (+35/+98)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	5594167 =	39 (0.660)					intergenic (‑114/+31)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase

GATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACT  >  NC_002947/5594020‑5594312                                                                                                                                                    |                                                                                                                                                  gATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAg                                                                                                                                                  >  6:73382/1‑149 (MQ=255)          gagagaACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGGCCGCGAAACCCCGCAAAGCCCGTGCCATGCCCCCCCCTGCTTGCTTCGCGGGCAACCCCGCAccc                                                                                                                                         >  6:5126/1‑149 (MQ=255)               aaCTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTTCCCCCGCACAACGGCCAAGCCCGTGGCAATCACCCCAGTGCTTTCTTAGCGGGCAAACCCCCTCCcccacg                                                                                                                                    >  7:338732/1‑147 (MQ=255)               aaCTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTAGCGGGCAAGCCCGCTCCCACAgg                                                                                                                                    >  2:320847/1‑149 (MQ=255)                          tGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCCAAAACCCGCAAAACCCGTGCCATGAACCCCAGAGCTTGATTAGCCGGCAAGCCCCCTCCCCCAGCGGAACGtgcag                                                                                                                         >  8:153170/1‑147 (MQ=25)                          tGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCCCCAACAACGGCAAAGCCGGTGCCATGCACCGCAATGCTTGCTTACCGGGCAAGGCCCCTCCCACAGGGTaaagatctg                                                                                                                         >  4:347147/1‑142 (MQ=37)                                 atggtcatgTCCGCAGGAGTGATGTTAAGTGGCAAACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGGGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTa                                                                                                                  <  2:85864/149‑1 (MQ=255)                                          tCCGCAGTTGTTATGTTAAGTGGAATACACCACCCTGTGGGAGCGGGCTTGCCCGCTAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgtg                                                                                                         <  2:1489/149‑1 (MQ=25)                                          tCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCaa                                                                                                                                                   >  7:294155/1‑107 (MQ=255)                                          tCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCaa                                                                                                                                                   <  8:294155/107‑1 (MQ=255)                                          tCCCCAGTAGTGATGTTAAGTGCCATACCCCCCCGTGTGGGAGCGGGCTGGCCCGCGAACACCGGCAAAGCGGGTGCCATGCACGGCTGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgtg                                                                                                         <  7:153170/149‑1 (MQ=25)                                                 gAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAgc                                                                                                  >  6:314243/1‑149 (MQ=255)                                                  tgttaTGTTATGTGGCATACCCACCCCGGTGGGTGGGGGGTTGCCGGCTAACACGGGCACCGCGGGTGCCAGGCAGGCCTGTGGTTGTTGCGGGGGCACGCCGGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAgct                                                                                                 <  6:242006/145‑1 (MQ=255)                                                    ggagtttAAGTGGCATACACCACCCTGGGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAgctgg                                                                                               <  5:5126/144‑1 (MQ=255)                                                       tGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAgctggct                                                                                             <  8:324355/148‑1 (MQ=255)                                                         ttAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAGGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGcc                                                                                          >  7:353339/1‑149 (MQ=255)                                                                   tACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCgg                                                                                <  6:144789/149‑1 (MQ=255)                                                                      cccaccCTGTGGGTGGGGGTTTGCCCGCTAACACCGGCAAAGCGGGTGCCATGAACGGCTGGGCTTGCTGCGCGGGAAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAAc                                                                             <  8:338732/148‑1 (MQ=255)                                                                                  gAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGc                                                                 <  5:73382/149‑1 (MQ=255)                                                                                  gAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGc                                                                 >  3:117224/1‑149 (MQ=255)                                                                                              ccgcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaAGCCCGCTCCCACAGGGTGAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCg                                                                       <  6:124007‑M2/77‑1 (MQ=255)                                                                                              ccgcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaAGCCCGCTCCCACAGGGTGAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCg                                                                       >  5:124007‑M2/55‑131 (MQ=255)                                                                                              ccGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGaa                                                                              >  5:129329/1‑124 (MQ=255)                                                                                              ccGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGaa                                                                              <  6:129329/124‑1 (MQ=255)                                                                                               cgcgaagcaagcactgcggtgcatggcaccggctctgccggtgttcgcgggcaAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGc                                                                     <  7:166011‑M2/79‑1 (MQ=255)                                                                                               cgcgaagcaagcactgcggtgcatggcaccggctctgccggtgttcgcgggcaAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGc                                                                     >  8:166011‑M2/54‑132 (MQ=255)                                                                                               cgcgAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCtt                                                    >  7:105825/1‑149 (MQ=255)                                                                                               cgcgAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCtt                                                    >  7:153989/1‑149 (MQ=255)                                                                                                 cgAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAGGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGc                                                  <  8:353339/149‑1 (MQ=255)                                                                                                       ccGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGAcc                                            <  5:314243/149‑1 (MQ=255)                                                                                                          gCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGa                                              <  6:282062/144‑1 (MQ=255)                                                                                                          gCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGa                                              >  5:282062/1‑144 (MQ=255)                                                                                                               gCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATc                                    >  2:54888/1‑149 (MQ=255)                                                                                                                   gTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgt                                                                                                          <  8:40157/75‑1 (MQ=255)                                                                                                                   gTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgt                                                                                                          >  7:40157/1‑75 (MQ=255)                                                                                                                        aTGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTc                           >  7:265795/1‑149 (MQ=255)                                                                                                                        aTGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTc                           >  8:389505/1‑149 (MQ=255)                                                                                                                        aTGCACCACAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTc                           >  7:55202/1‑149 (MQ=255)                                                                                                                         tGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAAc                                                                             >  6:39188/1‑98 (MQ=255)                                                                                                                         tGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTc                           >  8:262968/1‑148 (MQ=255)                                                                                                                         tGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTc                           >  4:121156/1‑148 (MQ=255)                                                                                                                           cACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGAt                        >  5:192981/1‑149 (MQ=255)                                                                                                                            aCCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtg                                                                                                           >  4:58255/1‑65 (MQ=255)                                                                                                                            aCCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtg                                                                                                           <  3:58255/65‑1 (MQ=255)                                                                                                                             ccGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCt                      <  4:117224/149‑1 (MQ=255)                                                                                                                                   tgcttgctTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAg                >  8:297691/1‑149 (MQ=255)                                                                                                                                     cttgcttCGGGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGc               <  3:347147/148‑1 (MQ=255)                                                                                                                                          ttcgcgggcaAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTc         >  2:124998‑M2/11‑149 (MQ=255)                                                                                                                                          ttcgcgggcaAGCCCGCTCCCACAGGGAAAGGAGCTGAGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCg                                                                       >  7:261007‑M2/11‑87 (MQ=255)                                                                                                                                            cgcgggcaAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTc         <  8:105825‑M2/139‑1 (MQ=255)                                                                                                                                            cgcgggcaAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTc         <  8:55202‑M2/139‑1 (MQ=255)                                                                                                                                             gcgggcaAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATcc                                   >  7:48241‑M2/8‑120 (MQ=255)                                                                                                                                             gcgggcaAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATcc                                   <  8:48241‑M2/113‑1 (MQ=255)                                                                                                                                                 gcaAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACt  >  8:72192‑M2/4‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACT  >  NC_002947/5594020‑5594312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.