New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2555263	60 (0.940)	4 (0.070)	4/242	NT	6.9%	coding (1244/1881 nt)	PP_2240	ABC transporter permease/ATP‑binding protein
	?	NC_002947	= 2555292	51 (0.840)					coding (1273/1881 nt)	PP_2240	ABC transporter permease/ATP‑binding protein

ACGATGCGTTCGCGCAGTACCGCGCGACCCTTGACCGTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGATCAAAGGGCCATCGGGCAGTGGTAAAACCACGCTGCTGCGTGCCCTGGCGGGCCTTTGGCCGTATGCCGAAGGCAAGG  >  NC_002947/2555155‑2555439                                                                                                                                          |                                                                                                                                                    aCGATGCGTTCGCGCAGTACCGCGCGACCCTTGACCGTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCcggac                                                                                                                                          >  6:307219/1‑149 (MQ=255)     tGCGTTCGCGCAGTACCGCGCGACCCTTGACCGTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCcggacgga                                                                                                                                       >  5:248800/1‑148 (MQ=255)        gTTCGCGCAGTACCGCGCGACCCTTGACCGTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGGTCACGGGATTGCAGGTGCTGCGCCCGGACGGACATg                                                                                                                                   >  5:155672/1‑149 (MQ=255)         ttCGCGCAGTACCGCGCGACCCTTGACCGTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGc                                                                                                                                  >  5:277053/1‑149 (MQ=255)         ttCGCGCAGTACCGCGCGACCCTTGACCGTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGc                                                                                                                                  >  8:174548/1‑149 (MQ=255)           cgcgCAGTACCGCGCGACCCTTGACCGTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGcc                                                                                                                                 <  2:140300/148‑1 (MQ=255)            gcgcAGTACCGCGCGACCCTTGACCGTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCt                                                                                                                               <  7:12758/149‑1 (MQ=255)                     cgcgcgACCCTTGACCGTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCcgga                                                                                                                                           <  3:93556/128‑1 (MQ=255)                     cgcgcgACCCTTGACCGTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCcgga                                                                                                                                           >  4:93556/1‑128 (MQ=255)                     cgcgcgACCCTTGACCGTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCga                                                                                                                      >  6:183172/1‑149 (MQ=255)                     cgcgcgACCCTTGACCGTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCga                                                                                                                      >  8:351765/1‑149 (MQ=255)                            cccTTGACCGTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGGTCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCgacctggac                                                                                                               <  6:155672/149‑1 (MQ=255)                            cccTTGACCGTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCgacctggac                                                                                                               >  2:378042/1‑149 (MQ=255)                                  aCCGTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGc                                                                                                         >  1:104738/1‑149 (MQ=255)                                    cGTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCtgcgc                                                                                                                                                <  8:323245‑M2/108‑6 (MQ=255)                                    cGTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCtgcgc                                                                                                                                                >  7:323245‑M2/1‑103 (MQ=255)                                     gTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTg                                                                                                      <  5:341425/149‑1 (MQ=255)                                           ccGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGcc                                                                                                >  1:110266/1‑149 (MQ=255)                                            cGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGGCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGAGCTGAGCCTGCATGCCg                                                                                               <  6:149400/149‑1 (MQ=255)                                            cGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGccc                                                                                                                                >  3:294931/1‑116 (MQ=255)                                            cGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGccc                                                                                                                                <  4:294931/116‑1 (MQ=255)                                            cGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCg                                                                                               >  2:86311/1‑149 (MQ=255)                                             ggCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCgacctggacc                                                                                                              <  3:129035/133‑1 (MQ=255)                                             ggCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCgacctggacc                                                                                                              >  4:129035/1‑133 (MQ=255)                                              gCTTTCTCGATGCCAACCAGAAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGc                                                                                             <  2:34677/149‑1 (MQ=255)                                                 ttCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAg                                                                                          >  3:298878/1‑149 (MQ=255)                                                    tcGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCg                                                                                       >  2:144062/1‑149 (MQ=255)                                                    tcGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCg                                                                                       >  8:325867/1‑149 (MQ=255)                                                      gATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGc                                                                                        <  1:86311/146‑1 (MQ=255)                                                        tGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCgttgt                                                                                   <  1:144062/149‑1 (MQ=255)                                                        tGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCgttgt                                                                                   <  7:174548/149‑1 (MQ=255)                                                           cAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGTTTCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGa                                                                                <  1:333593/149‑1 (MQ=255)                                                            aaCCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGAt                                                                               <  5:183172/149‑1 (MQ=255)                                                               cagcagGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCgacctggac                                                                                                               >  2:260728/1‑114 (MQ=255)                                                               cagcagGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCgacctggac                                                                                                               <  1:260728/114‑1 (MQ=255)                                                                 gcagGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGATCAAAg                                                                          >  5:258574/1‑149 (MQ=255)                                                                   agGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCgttgtt                                                                                  <  3:308526/139‑1 (MQ=255)                                                                   agGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCgttgtt                                                                                  >  4:308526/1‑139 (MQ=255)                                                                     gCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGATCAAAGGGc                                                                       >  8:193986/1‑148 (MQ=255)                                                                        aGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGATCAAAGGGCCATc                                                                   <  6:258574/149‑1 (MQ=255)                                                                        aGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGATCAAAGGGCCATc                                                                   <  7:351765/149‑1 (MQ=255)                                                                          tGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGATCAAAGGGCCATCgg                                                                 >  8:35508/1‑149 (MQ=255)                                                                                     gcgTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGATCAAAGGGCCATCGGGCAGTGGTaaa                                                      <  6:277053/149‑1 (MQ=255)                                                                                          accaccGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGATCAAAGGGCCATCGGGCAGTGGTAAAACCAc                                                 >  5:98029/1‑149 (MQ=255)                                                                                            caccGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCgttgtt                                                                                  >  6:116828/1‑114 (MQ=255)                                                                                            caccGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCgttgtt                                                                                  <  5:116828/114‑1 (MQ=255)                                                                                              ccGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCtgcgcctggtcttcggtggtgacgcgcggcaacgcacttgcctgctggttggcatcgagaaagccggtgagacggtcaagggtcgcgcggtactgcgcgaacg                                              <  4:67080‑M2/148‑104 (MQ=255)                                                                                                 aaGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGATCaaa                                                                           >  8:291234/1‑116 (MQ=255)                                                                                                    aCCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCtgcgcctggtcttcggtggtgacgcgcggcaacgcacttgcctgctggttggcatcgagaaagccggtgagacggtcaagg                                                                    >  2:376153‑M2/1‑39 (MQ=255)                                                                                                    aCCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCtgcgcctggtcttcggtggtgacgcgcggcaacgcacttgcctgctggttggcatcgagaaagccggtgagacggtcaagg                                                                    <  1:376153‑M2/120‑82 (MQ=255)                                                                                                        ggCGCATGCGCTGCAGATCACGGGATTGCAGGTGCtgcgcctggtcttcggtggtgacgcgcggcaacgcacttgcctgctggttggcatcgagaaagccggtgagacggtcaagggtcgcgcggtactgcgcgaacgcatcgtacgac                                   <  5:120038‑M2/149‑115 (MQ=255)                                                                                                          cgcATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGATCAAAGGGCCATCGGGCAGTGGTAAAACCACGCTGCTGCGTGCCCTg                                 <  7:221668/149‑1 (MQ=255)                                                                                                           gcATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGATCAAAGGGCCATCGGGCAGTGGTAAAACCACGCTGCTGCGTGCCCTgg                                >  2:307401/1‑149 (MQ=255)                                                                                                            cATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGATCAAAGGGCCATCGGGCAGTGGTAAAACCACGCTGCTGCGTGCCCTGGc                               <  7:325867/149‑1 (MQ=255)                                                                                                             aTGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGATCAAAGGGCCATCGGGCAGTGGTAAAACCACGCTGCTGCGTGCCCTGGCg                              <  5:307219/149‑1 (MQ=255)                                                                                                              tGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGATCAAAGGGCCATCGGGCAGTGGTAAAACCACGCTGCTGCGTGCCCTGGCgg                             <  2:110266/149‑1 (MQ=255)                                                                                                                      aGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGATCAAAGGGCCATCGGGCAGTGGTAAAACCACGCTGCTGCGTGCCCTGGCGGGCCTTTgg                     <  6:248800/149‑1 (MQ=255)                                                                                                                           aCGGGATTGCAGGTGCTGCGCCCGGAGGGACATGCGCTTATCGCCGAGCTGGACCTGAGCATGCATGCCGGCCAGGCGTTGTTGATCTATGGGCCATCGGGGAg                                                             <  2:37180/104‑1 (MQ=255)                                                                                                                           aCGGGATTGCAGGTGCTGCGCCCGGACGGAGATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCACGCGTTCTTGATCAAAGGGCCATCGGGCAg                                                             >  1:37180/1‑104 (MQ=255)                                                                                                                                    cAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGATCAAAGGGCCATCGGGCAGTGGTAAAACCACGCTGCTGCGTGCCCTGGCGGGCCTTTGGCCGTATGCCGAAg        <  1:307401/148‑1 (MQ=255)                                                                                                                                         gctgcGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGATCAAAGGGCCATCGGGCAGTGGTAAAACCACGCTGCTGCGTGCCCTGGCGGGCCTTTGGCCGTATGCCGAAGGCAAgg  <  4:298878/149‑1 (MQ=255)                                                                                                                                          |                                                                                                                                                    ACGATGCGTTCGCGCAGTACCGCGCGACCCTTGACCGTCTCACCGGCTTTCTCGATGCCAACCAGCAGGCAAGTGCGTTGCCGCGCGTCACCACCGAAGACCAGGCGCATGCGCTGCAGATCACGGGATTGCAGGTGCTGCGCCCGGACGGACATGCCCTTATCGCCGACCTGGACCTGAGCCTGCATGCCGGCCAGGCGTTGTTGATCAAAGGGCCATCGGGCAGTGGTAAAACCACGCTGCTGCGTGCCCTGGCGGGCCTTTGGCCGTATGCCGAAGGCAAGG  >  NC_002947/2555155‑2555439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.