New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5099947 =	51 (0.800)	7 (0.140)	7/204	NT	15.6%	intergenic (+33/+120)	PP_4488/phhR	hypothetical protein/sigma‑54 dependent transcriptional regulator
	?	NC_002947	5100029 =	35 (0.680)					intergenic (+115/+38)	PP_4488/phhR	hypothetical protein/sigma‑54 dependent transcriptional regulator

CGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATC  >  NC_002947/5099882‑5100175                                                                                                                                                    |                                                                                                                                                     cgcgTGATGGGGACCGGCTGCTCCAACGGCGGATCCCTTGGAAGCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGaaa                                                                                                                                                     <  3:144623/149‑1 (MQ=255)  actcgcttaacaagtcggcggattagttgttggtcaaagaacctgtgactgcgttgcagtcctttcgcgacacaaggccgctcccacagttaatgcgctcagccagagcacagcgtattacctgtgggagcggccttgtgtcgcgaaa                                                                                                                                                     <  1:109700‑M2/2‑1 (MQ=255)    gTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGa                                                                                                                                                  <  6:417588/149‑1 (MQ=255)                     ctCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCaa                                                                                                                                           <  5:313498/138‑1 (MQ=255)                       ccAACGGCTGATACCTTGGAATCGGGGGCCCAGCGGGCCCCTATCGCGACACAAAGCCCCAACCACAGATAATGCGCTAAGCCACAGCCAAGCGTAATAACAGTGGGAGCGGCCATGTGTGGCGAAAGGAC‑AGCCAACCATTCCCAgct                                                                                                                              >  4:344355/1‑147 (MQ=255)                            ggCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCttt                                                                                                                         <  5:103962/149‑1 (MQ=255)                               tGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGa                                                                                                                                                  <  1:325888/122‑1 (MQ=255)                                gATACCTTGGAATCGGGGGCCCAGCGGGCCCCTATAGCGACACAAAGCCCCACCCACACAAAAATCCCTCAGCCAAACCACACCCGATTAACAGTGGGAGCGGCCGTGTGTGGCGAAAGGCC‑AGGAACCCAGTCCCAGGGTCTTTGAc                                                                                                                      >  2:132354/1‑148 (MQ=255)                                            tCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATcc                                                                                                         <  5:354249/149‑1 (MQ=255)                                            ataggggCCCGCAGGGCCCCTATCGCGAAACAAGGCCGCACCCACAGAAAATGCCCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAA‑GGGAACCCAGTCCCAGGTTCTTTGACCAAAAACAAAtac                                                                                                         >  4:96844/4‑147 (MQ=37)                                                    ccTGCGGGCCCCTATCGCGCCACAAGGCCCCGCCCCCCGCTAAATCCCAAAACCACAGCCCACCGGATTACCGGTGGGCGCGGCCGTGTGTGGCGAACGGCA‑AGCAAACCACGCCCACGGTCGTTGACCCACCACCAAAccgccccagt                                                                                                 >  8:355907/1‑144 (MQ=255)                                                    ccTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACg                                                                                                                                         <  8:308181/109‑1 (MQ=255)                                                    ccTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACg                                                                                                                                         >  7:308181/1‑109 (MQ=255)                                                         gggCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCATAGCTCAGCGTATTTGCTGTGCGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTaa                                                                                            <  1:132354/149‑1 (MQ=38)                                                          ggCCCCTATCGCGACAAAAGGCCGCTCCCACAGATAATGCGCTAAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAg                                                                                           <  7:142558/149‑1 (MQ=255)                                                           gCCCCTATCGCGACACAAGTCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGc                                                                                          <  3:344355/149‑1 (MQ=255)                                                           gCCCCTATCGCGACACAAGGCGGCTCCCACAGATAATGCGCTCAGCCAGAGCAAAGCGTATTAACTGTGGTAGCGGACTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCttt                                                                                                                         <  5:172501/118‑1 (MQ=255)                                                           gCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCAAGAGCACAGCGTATTACCTGTGGGAGGGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGc                                                                                          <  4:264597/149‑1 (MQ=255)                                                             cccTATCGCTACACAAGGCCGCTCCCACATATAATGCGCTCAGCCATAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGa                                                                                        <  3:291388/149‑1 (MQ=255)                                                             cccTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑AGGAACGCAGTCCCAGGTTCttt                                                                                                                         >  1:336536/1‑116 (MQ=255)                                                             cccTATCGCCACACACGGCCGCTCCCACATATAATGCGCTCAGCCAGAGCACAGCGTATTCCCTGGGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCttt                                                                                                                         <  2:336536/116‑1 (MQ=38)                                                              ccTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGACTTGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGa                                                                                        <  1:112555/149‑1 (MQ=255)                                                                ttTCGCGACACAAGGCCGCTCCCACAGGTAATACGCTGTGCTCTGGCTGAGCGCATTAACTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCACAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGt                                                                                      <  1:109700‑M1/146‑1 (MQ=255)                                                                       ACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCACCGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCt                                                                              <  5:74378‑M1/148‑1 (MQ=255)                                                                       ACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCt                                                                              <  6:318849‑M1/148‑1 (MQ=255)                                                                       ACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCt                                                                              <  5:78984‑M1/148‑1 (MQ=255)                                                                       ACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTc                                                                             >  6:78984‑M1/1‑149 (MQ=255)                                                                          CAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAAc                                                                          >  5:318849‑M1/1‑149 (MQ=255)                                                                               CCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCTTATTACCTTTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACttgtt                                                                     >  5:362875‑M1/1‑149 (MQ=255)                                                                                   tcccacaggtaatacgctgtgctctcgctgagcgcattatctgtgggagcggccttgtgtcgcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGa                                                                                        >  5:12895‑M2/66‑127 (MQ=255)                                                                                   tcccacaggtaatacgctgtgctctcgctgagcgcattatctgtgggagcggccttgtgtcgcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGa                                                                                        <  6:12895‑M2/62‑1 (MQ=255)                                                                                     ccacaggtaatacgctgtgctctggctgagcgcattatctgtgggagcggccttgtgtcgcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGa                                                                                                                       >  1:138815‑M2/64‑94 (MQ=255)                                                                                     ccacaggtaatacgctgtgctctggctgagcgcattatctgtgggagcggccttgtgtcgcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGa                                                                                                                       <  2:138815‑M2/31‑1 (MQ=255)                                                                                     ccacaggtaatacgctgtgctctggctgagcgcattatctgtgggagcggccttgtgtcgcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAAt                                                               >  8:26134‑M2/64‑149 (MQ=255)                                                                                     CCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAAt                                                               <  7:388961‑M1/149‑1 (MQ=255)                                                                                      cacaggtaatacgctgtgctctggctgagcgcattacctgtgggagcggccttgtgtcgcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACttgttg                                                                    >  4:203517‑M2/63‑143 (MQ=255)                                                                                      cacaggtaatacgctgtgctctggctgagcgcattacctgtgggagcggccttgtgtcgcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACttgttg                                                                    <  3:203517‑M2/81‑1 (MQ=255)                                                                                      CACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAAtt                                                              <  5:76641‑M1/149‑1 (MQ=255)                                                                                       ACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGAGGGAGCGGCCTAGTGTCGCGAAAGCAC‑TCCAACGCAGTCCCAGGTTATTTGACCAACAACTAATCCGCCGACATCTTAAGCGAGTAAA‑CCCTCAACGTGTTGGCAATTg                                                             <  2:52316‑M1/149‑1 (MQ=255)                                                                                         AGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTc                                                           >  6:76641‑M1/1‑149 (MQ=255)                                                                                           aTAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCgt                                                         >  4:122689/1‑149 (MQ=255)                                                                                            tAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCgt                                                         <  3:122689/148‑1 (MQ=255)                                                                                                 cgcTCACCCAGCGCACAGCGTATTCCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGc                                                     <  1:147436/147‑1 (MQ=255)                                                                                                      aGCCAGAGCACAGCGTATTACCTGTGCTAGAGGCATTGAGTAGCGAAAGGAC‑TGCAACGCAGTCCCATCTTCTTTGACAAACAACTAATCCTCCGACTTGTTAAGCGAGTAAT‑CACTCAACTAGTTGGCAATTGTCGTCTGCGAAacac                                              >  6:96665/1‑149 (MQ=255)                                                                                                        ccAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACttgtt                                                                     <  1:200720/124‑1 (MQ=255)                                                                                                        ccAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACttgtt                                                                     >  2:200720/1‑124 (MQ=255)                                                                                                        ccAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACAcc                                             >  3:162545/1‑148 (MQ=255)                                                                                                          agagCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAg                                          >  3:351272/1‑149 (MQ=255)                                                                                                          agagCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAg                                          >  7:208369/1‑149 (MQ=255)                                                                                                          agagCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAg                                          <  8:388961/149‑1 (MQ=255)                                                                                                           gaacacaGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGt                                         >  2:121608/4‑149 (MQ=255)                                                                                                              cacaGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCtt                                      >  8:76776/1‑149 (MQ=255)                                                                                                                caGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGAGTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCtttt                                    >  7:217174/1‑149 (MQ=255)                                                                                                                caGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCtttt                                    <  8:217174/149‑1 (MQ=255)                                                                                                                 aGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTg                                   <  7:76776/149‑1 (MQ=255)                                                                                                                    gTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACttgttg                                                                    >  6:167472/1‑113 (MQ=255)                                                                                                                    gTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACttgttg                                                                    <  5:167472/113‑1 (MQ=255)                                                                                                                         aCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACttgt                                                                      >  7:218125/1‑106 (MQ=255)                                                                                                                         aCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACttgt                                                                      <  8:218125/106‑1 (MQ=255)                                                                                                                           ctgtgggagcggccttgtgtcgcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTc                                                           >  6:235162‑M2/26‑115 (MQ=255)                                                                                                                              tgggagcggccttgtgtcgcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGccc                         <  7:26134‑M2/124‑1 (MQ=255)                                                                                                                                ggagcggccttgtgtcgcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGacta                    >  8:202395‑M2/21‑149 (MQ=255)                                                                                                                                ggagcggccttgtgtcgcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGact                     <  4:351272‑M2/128‑1 (MQ=255)                                                                                                                                 gagcggccttgtgtcgcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGactac                   >  7:227081‑M2/20‑149 (MQ=255)                                                                                                                                    cggccttgtgtcgcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACCACTACTCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTg                 <  7:355907‑M2/132‑1 (MQ=255)                                                                                                                                    cGGCCTTGTGGCCGGTAAGGAC‑AGCAAAGCATTCCCATGTTCTTTTAACAAAAAATAATCCGCCGTCTTGTTAACCGATTAATCCCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGactact                  <  1:121608/148‑1 (MQ=255)                                                                                                                                     ggccttgtgtcgcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTggg               <  6:74378‑M2/134‑1 (MQ=255)                                                                                                                                       ccttgtgtcgcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGactac                   <  5:199362‑M2/130‑1 (MQ=255)                                                                                                                                       ccttgtgtcgcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGactac                   >  6:199362‑M2/14‑143 (MQ=255)                                                                                                                                              tcgcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTcccc      >  3:84941‑M2/7‑149 (MQ=255)                                                                                                                                              tcgcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTcccc      >  7:219221‑M2/7‑149 (MQ=255)                                                                                                                                                gcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTccccc     <  3:96844‑M2/144‑1 (MQ=255)                                                                                                                                                gcgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCACTCTTTTGCCCAAGGCCCGCCTAATGGGAAACTccccc     >  4:234058‑M2/5‑148 (MQ=255)                                                                                                                                                 cgaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGGTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCa    >  7:287015‑M2/4‑148 (MQ=255)                                                                                                                                                  gaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTg                 <  5:299997‑M2/132‑1 (MQ=255)                                                                                                                                                  gaAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTg                 >  6:299997‑M2/3‑134 (MQ=255)                                                                                                                                                   aAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATc  >  7:324464‑M2/2‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CGCGTGATGGGGAACGGCTGCTCCAACGGCTGATACCTTGGAATCGGGGGCCCTGCGGGCCCCTATCGCGACACAAGGCCGCTCCCACAGATAATGCGCTCAGCCAGAGCACAGCGTATTACCTGTGGGAGCGGCCTTGTGTCGCGAAAGGAC‑TGCAACGCAGTCCCAGGTTCTTTGACCAACAACTAATCCGCCGACTTGTTAAGCGAGTAAT‑CCCTCAACTTGTTGGCAATTGTCGTGTGCGAAACACCCAGTCTTTTGCCCAAGGCCCGACTACTGGGAAACTCCCCCATC  >  NC_002947/5099882‑5100175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.