New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5477090 =	49 (0.750)	7 (0.150)	5/192	6.4	18.8%	intergenic (+3/+109)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
	?	NC_002947	5477189 =	26 (0.570)					intergenic (+102/+10)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCCTCGATTCGCCACAGCAGCGGCTG‑GGCGAGATCCAGAAGCTGCTGGAGCGGATTCAGGGGGAGTTGTTCGCCTGATGGTTCTGTATTGCCTGTGCCGGCCTA‑TTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5477275‑5477090 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGCCA  >  NC_002947/5477189‑5477335                                                                                                                                                                                                                                                                                                                                                  CCCTCGATTCGCCACAGCAGCGGGTG‑GGCGAGATCCAGAAGCTGCGGGTGCGGATTCAGGGGGAGTTGTTGGCCTGATTGTTCTGTATTTCCTGTGCCGGCCTACTTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGT                                                                                                                                                                                            <  1:274966/149‑1    TCGATTCGCCACAGCAGCGGCTG‑GGCGAGATCCAGAAGCTGCTGGAGCGGATTCAGGGGGAGTTGTTCGCCTGATGGTTCTGTATTGCCTGTGCCGGCCTA‑TTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAG                                                                                                                                                                                          >  2:352652/1‑147          CGCCACAGCAGCGGCTG‑GGCGAGATCCAGAAGCTGCTGGAGCGGATTCAGGGGGAGTTGTTCGCCTGATGGTTCTGTATTGCCTGTGCCGGCCTA‑TTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGG                                                                                                                                                                                   <  8:213041/148‑1            gccCAGCCGCTGCTGTGGCGAGATCCAGAAGCTGCTGGAGCGGATTCAGGGGGAGTTGTTCGCCTGATGGTTCTGTATTGCCTGTGCCGGCCTA‑TTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGG                                                                                                                                                                                    <  3:375622/143‑1               CAGCAGCGGCTG‑GGCGAGATCCAGAAGCTGCTGGAGCGGATTCAGGGGGAGTTGTTCGCCTGATGGTTCTGTATTGCCTGTGCCGGCCTA‑TTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACC                                                                                                                                                                             <  1:194695/149‑1                 GCAGCGGCTG‑GGCGAGATCCAGAAGCTGCTGGAGCGGATTCAGGGGGAGTTGTTCGCCTGATGGTTCTGTATTGCCTGTGCCGGCCTA‑TTAGCGGGTTAACCCGCTCCTACGCTAAGCGCGCTCCCGTGCGGTGGAGCGGGGTTTCCCG                                                                                                                                                                           >  5:250064/1‑149                      GGCTG‑GGCGAGATCCAGAAGCTGCTGGAGCGGATTCAGGGGGAGTTGTTCGCCTGATGGTTCTGTATTGCCTGTGCCGGCCTA‑TTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAA                                                                                                                                                                       >  7:48180/1‑148                         TG‑GGCGAGATCCAGAAGCTGCTGGAGCGGATTCAGGGGGAGTTGTTCGCCTGATGGTTCTGTATTGCCTGTGCCGGCCTA‑TTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGG                                                                                                                                                                   >  8:267235/1‑149                         TG‑GGCGAGATCCAGAAGCTGCTGGAGCGGATTCAGGGGGAGTTGTTCGCCTGATGGTTCTGTATTGCCTGTGCCGGCCTA‑TTCGCGGGTAAACCCGCGCCTACGATAACGGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGG                                                                                                                                                                   >  6:14267/1‑149                         TG‑GGCGAGATCCAGAAGCTGCTGGAGCGGATTCAGGGGGAGTTGTTCGCCTGATGGTTCTGTATTGCCTGTGCCGGCCTA‑TTAGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGGGCGTAGGAGCGGGGTTACCCGCGAATAGG                                                                                                                                                                   >  6:19847/1‑149                                     CAGAAGCTGCTGGAGCGGATTCAGGGGGAGTTGTTCGCCTGATGGTTCTGTATTGCCTGTGCCGGCCTA‑TTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGC                                                                                                                                                        <  7:267235/149‑1                                                                                                        TA‑TTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGC                                                                                    >  4:86677/1‑149                                                                                                                       CCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATC                                                                                              >  3:25435/1‑126                                                                                                                       CCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATC                                                                                              <  4:25435/126‑1                                                                                                                          GCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATC                                                                   >  2:204645/1‑149                                                                                                                          GCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATC                                                                   >  4:96847/1‑149                                                                                                                          GCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTG                                                                                                  >  1:326869/1‑119                                                                                                                          GCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTG                                                                                                  <  2:326869/119‑1                                                                                                                                                     GTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTC                                           >  3:202388/1‑146                                                                                                                                                     GTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTC                                           <  4:202388/146‑1                                                                                                                                                      TAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTC                                                                                                    <  6:5635/89‑1                                                                                                                                                      TAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTC                                                                                                    >  5:5635/1‑89                                                                                                                                                        GGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTT                                      <  7:213041/148‑1                                                                                                                                                        GGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTT                                      <  3:96847/148‑1                                                                                                                                                         GAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCACAGCAGCGGCTGggcg                                                                        >  6:124003/1‑110                                                                                                                                                         GAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCACAGCAGCGGCTGggcg                                                                        <  5:124003/114‑5                                                                                                                                                         GAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCC                                    <  7:8431/149‑1                                                                                                                                                           GCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCAT                                  <  1:322012/149‑1                                                                                                                                                           GCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCAT                                  >  8:186530/1‑149                                                                                                                                                           GCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGC                                                         <  8:216930/126‑1                                                                                                                                                           GCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGC                                                         >  7:216930/1‑126                                                                                                                                                              GGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCG                                                                  <  7:42337/114‑1                                                                                                                                                              GGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCG                                                                  >  8:42337/1‑114                                                                                                                                                               GTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAAC                              >  1:77029/1‑149                                                                                                                                                               GTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTT                                      >  2:31949/1‑141                                                                                                                                                               GTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCC                                          <  3:249760/137‑1                                                                                                                                                               GTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAAACGAGGGTCAGCAGGTCCAGCTTGTCCTCTT                                      <  1:31949/141‑1                                                                                                                                                               GTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑AAGCCGCTGCTGTGGCGAATCTAGGGTCCGCAGGGCCAGCTgggcg                                          >  4:249760/1‑132                                                                                                                                                                    CCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAA                         <  5:78745/149‑1                                                                                                                                                                     CCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCT                                                                                                                        >  7:85081/1‑54                                                                                                                                                                     CCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCT                                                                                                                        <  8:85081/54‑1                                                                                                                                                                          AATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTA                   <  2:77029/149‑1                                                                                                                                                                              GGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGC                <  5:71792/148‑1                                                                                                                                                                               GCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGC                >  2:264092/1‑147                                                                                                                                                                                 CGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGC            >  2:319562/1‑149                                                                                                                                                                                   GCACAGGCAATACAGAACCATCAGGCGAACAACCCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGCT           >  2:380196/1‑148                                                                                                                                                                                       AGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGCTGATTG      <  3:86677/149‑1                                                                                                                                                                                          CAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGC    >  2:42201/1‑148                                                                                                                                                                                           AATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGCCA  <  8:68551/149‑1                                                                                                                                                                                                                                                                                                                                                  CCCTCGATTCGCCACAGCAGCGGCTG‑GGCGAGATCCAGAAGCTGCTGGAGCGGATTCAGGGGGAGTTGTTCGCCTGATGGTTCTGTATTGCCTGTGCCGGCCTA‑TTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5477275‑5477090 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGCCA  >  NC_002947/5477189‑5477335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.