New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5477090 =	49 (0.750)	7 (0.150)	5/192	6.4	18.8%	intergenic (+3/+109)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
	?	NC_002947	5477189 =	26 (0.570)					intergenic (+102/+10)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGCCA  >  NC_002947/5477046‑5477335                                                                                                                                                 |                                                                                                                                                    atgcatgcGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGGGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATAc                                                                                                                                                   <  2:23414/146‑1 (MQ=255) atgcatgcGTTGCCGCAGGCGTTGGTCAAGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGGGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATAc                                                                                                                                                   >  1:23414/1‑146 (MQ=255)     atgcGTGGCCGCAGGCGTTGGTCAGTTATAAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCTAA‑TAGGCCGGCACAGGCAATACAGAACCa                                                                                                                                            <  2:137015/149‑1 (MQ=255)              cGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGaa                                                                                                                                   >  7:86471/1‑149 (MQ=255)                    cGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTACTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTc                                                                                                                             >  1:352652/1‑149 (MQ=255)                        ggTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTcccc                                                                                                                          <  8:86471/148‑1 (MQ=255)                         gTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGTTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCt                                                                                                                        <  7:159681/149‑1 (MQ=255)                         gTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCt                                                                                                                        <  3:239606/149‑1 (MQ=255)                            aGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGAAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGaa                                                                                                                     >  1:121769/1‑149 (MQ=255)                                 tCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCg                                                                                                                 >  2:322012/1‑148 (MQ=255)                                       ttGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGAAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCcag                                                                                                           <  2:121769/148‑1 (MQ=255)                                          aTGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCagcagc                                                                                                       >  6:71792/1‑149 (MQ=255)                                               gCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTg                                                                                                  >  7:267235/1‑149 (MQ=255)                                                          ccTATTCGCGGGTAACCCCGCTCCTACGCCCGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCTAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑Ca                                                                                      <  6:19847/149‑1 (MQ=255)                                                          ccTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑Ca                                                                                      <  8:267235/149‑1 (MQ=255)                                                          ccTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCCGTTATCGTAGGCGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑Ca                                                                                      <  6:14267/149‑1 (MQ=255)                                                              ttCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGcc                                                                                   <  7:48180/148‑1 (MQ=255)                                                                  cgGGAAACCCCGCTCCACCGCACGGGAGCGCGCTTAGCGTAGGAGCGGGTTAACCCGCTAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCgctgc                                                                              <  5:250064/149‑1 (MQ=38)                                                                    ggTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGctgctg                                                                            >  1:194695/1‑149 (MQ=255)                                                                          cccGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCg                                                                       >  8:213041/1‑148 (MQ=255)                                                                           ccGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCACAGCAGcggctgggc                                                                         >  3:375622/1‑143 (MQ=39)                                                                                 cTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGa                                                                 <  2:352652/147‑1 (MQ=255)                                                                                   aCGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAAGTAGGCCGGCACAGGAAATACAGAACAATCAGGCCAACAACTCCCCCTGAATCCGCACCCGCAGCTTCTGGATCTCGCC‑CACCCGCTGCTGTGGCGAATCGAggg                                                              >  1:274966/1‑149 (MQ=38)                                                                                       aCGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTcag                                                          >  7:68551/1‑148 (MQ=255)                                                                                            aTCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGt                                                     >  8:8431/1‑148 (MQ=255)                                                                                                 gcTTATCGTAGGAGCGGGTTTACCAGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCt                                               >  6:78745/1‑149 (MQ=255)                                                                                                        gTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTc                                           >  3:202388/1‑146 (MQ=255)                                                                                                        gTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTc                                           <  4:202388/146‑1 (MQ=255)                                                                                                         tAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTc                                                                                                    >  5:5635/1‑89 (MQ=255)                                                                                                         tAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTc                                                                                                    <  6:5635/89‑1 (MQ=255)                                                                                                           ggAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCtt                                      <  7:213041/148‑1 (MQ=255)                                                                                                           ggAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCtt                                      <  3:96847/148‑1 (MQ=255)                                                                                                            gAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCACAGCAGcggctgggcg                                                                        <  5:124003/114‑5 (MQ=38)                                                                                                            gAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCACAGCAGcggctgggcg                                                                        >  6:124003/1‑110 (MQ=38)                                                                                                            gAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTcc                                    <  7:8431/149‑1 (MQ=255)                                                                                                              gCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTcagc                                                         >  7:216930/1‑126 (MQ=255)                                                                                                              gCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTcagc                                                         <  8:216930/126‑1 (MQ=255)                                                                                                              gCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCAt                                  >  8:186530/1‑149 (MQ=255)                                                                                                              gCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCAt                                  <  1:322012/149‑1 (MQ=255)                                                                                                                 ggTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCg                                                                  >  8:42337/1‑114 (MQ=255)                                                                                                                 ggTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCg                                                                  <  7:42337/114‑1 (MQ=255)                                                                                                                  gTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTcc                                          <  3:249760/137‑1 (MQ=255)                                                                                                                  gTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCtt                                      >  2:31949/1‑141 (MQ=255)                                                                                                                  gTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAAc                              >  1:77029/1‑149 (MQ=255)                                                                                                                  gTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAAACGAGGGTCAGCAGGTCCAGCTTGTCCTCtt                                      <  1:31949/141‑1 (MQ=255)                                                                                                                  gTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑AAGCCGCTGCTGTGGCGAATCTAGGGTCCGCAGGGCCAGCtgggcg                                          >  4:249760/1‑132 (MQ=255)                                                                                                                       cccGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCaa                         <  5:78745/149‑1 (MQ=255)                                                                                                                        ccGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCt                                                                                                                        >  7:85081/1‑54 (MQ=255)                                                                                                                        ccGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCt                                                                                                                        <  8:85081/54‑1 (MQ=255)                                                                                                                             aa‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTa                   <  2:77029/149‑1 (MQ=255)                                                                                                                                  ggCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGc                <  5:71792/148‑1 (MQ=255)                                                                                                                                   gCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGc                >  2:264092/1‑147 (MQ=255)                                                                                                                                     cGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGc            >  2:319562/1‑149 (MQ=255)                                                                                                                                     cGGCACAGGCAATACAGAACCATCAGGAGAACAACTCCCCCTGAAACAGCTCCAGCATCTTCTCGATCTCGCC‑CAGCCGCTGCTCTGGCGAATCGAGGGTCAGCAGCTCCAGCTTGTCCTCATCCATGAACGGAAACACGTAcacacgc            >  4:321089/1‑143 (MQ=255)                                                                                                                                       gCACAGGCAATACAGAACCATCAGGCGAACAACCCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGCt           >  2:380196/1‑148 (MQ=255)                                                                                                                                           aGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGCTGATTg      <  3:86677/149‑1 (MQ=255)                                                                                                                                              cAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGc    >  2:42201/1‑148 (MQ=255)                                                                                                                                               aaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGCCa  <  8:68551/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    ATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAA‑TAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCC‑CAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGCCA  >  NC_002947/5477046‑5477335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.