New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1970739	49 (0.750)	8 (0.140)	7/234	6.5	16.5%	intergenic (+33/‑233)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
	?	NC_002947	= 1970801	39 (0.700)					intergenic (+95/‑171)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCC  >  NC_002947/1970591‑1970884                                                                                                                                                       |                                                                                                                                                    tgtTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCt                                                                                                                                                     >  2:132178/1‑149 (MQ=255)   ttCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑Tg                                                                                                                                                  >  4:255619/1‑149 (MQ=255)      gATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGccc                                                                                                                                               <  6:31679/149‑1 (MQ=255)      gATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGcc                                                                                                                                                <  4:315142/148‑1 (MQ=255)       aTGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCg                                                                                                                                              >  6:372163/1‑149 (MQ=255)              gccggccgACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCA‑AGCCCGcgaagag                                                                                                                                       <  6:160612/149‑7 (MQ=255)                       ccTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCAGTGGGagcgg                                                                                                                              <  4:357149/149‑5 (MQ=255)                                    aTCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAgg                                                                                                                 >  7:65702/1‑149 (MQ=255)                                    aTCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAg                                                                                                                  <  1:12630/148‑1 (MQ=255)                                         gACTGAATGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCgt                                                                                                            >  7:73415/1‑149 (MQ=255)                                         gACCGCACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCgt                                                                                                            >  1:143978/1‑149 (MQ=255)                                          aCCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTg                                                                                                                                     <  6:295392/123‑1 (MQ=255)                                          aCCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCACACTg                                                                                                                                     >  5:295392/1‑123 (MQ=255)                                                   ggCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TTCCCGCTCCCACTGGGATATCGCAAGGCCTTAGGGCCGTGGTGAAccag                                                                                                  >  4:262749/1‑147 (MQ=255)                                                     cATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCtgtg                                                                                                <  5:372163/149‑1 (MQ=255)                                                      aTCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTgg                                                                                               <  5:113571/149‑1 (MQ=255)                                                         gtcgAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTggggg                                                                                            <  2:143978/149‑1 (MQ=255)                                                         gtcgAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTgggg                                                                                             <  3:262749/148‑1 (MQ=255)                                                              gcgcCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATc                                                                                                                              <  6:274718/110‑1 (MQ=255)                                                              gcgcCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGgggcgggc                                                                                       <  2:51853/149‑1 (MQ=255)                                                                 cccGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAg                                                                                    >  6:3039/1‑149 (MQ=255)                                                                 cccGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAg                                                                                    >  1:37714/1‑149 (MQ=255)                                                                  ccGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGc                                                                                   >  8:30416/1‑149 (MQ=255)                                                                  ccGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGc                                                                                   <  2:37714/149‑1 (MQ=255)                                                                         ctgcCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGaa                                                                            <  8:65702/149‑1 (MQ=255)                                                                          tgcCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGc                                                                                                                                                 >  5:164436/1‑79 (MQ=255)                                                                          tgcCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGc                                                                                                                                                 <  6:164436/79‑1 (MQ=255)                                                                            ccAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGAACCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCcgcg                                                                              >  1:304165/1‑146 (MQ=255)                                                                                     cTCAGCTGGTTTGCCGCAAGCGCCGCCACTTATTTTGTAGCGCCTCCCCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACGGGTATATCGCATGCCCTTCGGGCCGTGGTCAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCa                                                                <  6:215700/149‑1 (MQ=37)                                                                                      tCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAg                                                               >  5:215700/1‑149 (MQ=255)                                                                                        aGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGgggcggg                                                                                        >  6:835/1‑122 (MQ=255)                                                                                        aGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGc                                                             <  2:66897/149‑1 (MQ=255)                                                                                            ggTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATa                                                         >  4:128414/1‑149 (MQ=255)                                                                                                       aGCGCCTGCACTGATTTTGAACCGCCCCCCCGG‑‑CCGCTCCGCGGGCT‑TGCCCGCTCCCACTGGCATATCGCAGGGCCTTAGGGCCGTGGGGACCCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAgg                                              <  1:357423/149‑1 (MQ=37)                                                                                                        gcgcCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGTTATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGt                                             >  7:296821/1‑149 (MQ=255)                                                                                                                  tGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCTATGCCCGCTCCCAGTGGGATTTCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACGAGGTTTCCAg‑cgc                                   >  1:258260/1‑149 (MQ=38)                                                                                                                   gATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCgg                                 >  8:354231/1‑149 (MQ=255)                                                                                                                    aTTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGc                                >  4:290971/1‑149 (MQ=255)                                                                                                                     ttttGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCt                               <  3:128414/149‑1 (MQ=255)                                                                                                                                  cACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGcc                  >  6:143792/1‑149 (MQ=255)                                                                                                                                   aCCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGCACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGGAGGCAATACAAAAACCAgg                                              >  5:5142/1‑121 (MQ=255)                                                                                                                                   aCCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAACACAGGTTTCAAG‑CGCGGCTGAGACCAACTGccc                 >  8:16709/1‑148 (MQ=255)                                                                                                                                   aCCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGc                   <  2:304165/147‑1 (MQ=255)                                                                                                                                    ccGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCTGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCAc                <  7:30416/149‑1 (MQ=255)                                                                                                                                    ccGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTCAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCAc                <  5:3039/149‑1 (MQ=255)                                                                                                                                           ctctTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAAc                                                  >  3:364214/1‑111 (MQ=255)                                                                                                                                           ctctTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAAc                                                  <  4:364214/111‑1 (MQ=255)                                                                                                                                             ctTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCCGCGGCTGAGACCAACTGCCACCtctc           <  1:212544/148‑1 (MQ=255)                                                                                                                                             ctTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCtctc           >  2:212544/1‑147 (MQ=255)                                                                                                                                                cgcgGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTccc         <  7:354231/146‑1 (MQ=255)                                                                                                                                                    ggCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGcc  <  3:255619/149‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                    TGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCC  >  NC_002947/1970591‑1970884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.