New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1970739	49 (0.750)	8 (0.140)	7/234	6.5	16.5%	intergenic (+33/‑233)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
	?	NC_002947	= 1970801	39 (0.700)					intergenic (+95/‑171)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGC  >  NC_002947/1970655‑1970933                                                                                                                                                      |                                                                                                                                      cccGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAg                                                                                                                                     >  1:37714/1‑149 (MQ=255) cccGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAg                                                                                                                                     >  6:3039/1‑149 (MQ=255)  ccGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGc                                                                                                                                    >  8:30416/1‑149 (MQ=255)  ccGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGc                                                                                                                                    <  2:37714/149‑1 (MQ=255)         ctgcCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGaa                                                                                                                             <  8:65702/149‑1 (MQ=255)            ccAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGAACCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCcgcg                                                                                                                               >  1:304165/1‑146 (MQ=255)                     cTCAGCTGGTTTGCCGCAAGCGCCGCCACTTATTTTGTAGCGCCTCCCCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACGGGTATATCGCATGCCCTTCGGGCCGTGGTCAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCa                                                                                                                 <  6:215700/149‑1 (MQ=37)                      tCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAg                                                                                                                >  5:215700/1‑149 (MQ=255)                        aGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGc                                                                                                              <  2:66897/149‑1 (MQ=255)                            ggTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATa                                                                                                          >  4:128414/1‑149 (MQ=255)                                       aGCGCCTGCACTGATTTTGAACCGCCCCCCCGG‑‑CCGCTCCGCGGGCT‑TGCCCGCTCCCACTGGCATATCGCAGGGCCTTAGGGCCGTGGGGACCCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAgg                                                                                               <  1:357423/149‑1 (MQ=37)                                        gcgcCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGTTATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGt                                                                                              >  7:296821/1‑149 (MQ=255)                                                  tGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCTATGCCCGCTCCCAGTGGGATTTCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACGAGGTTTCCAg‑cgc                                                                                    >  1:258260/1‑149 (MQ=38)                                                   gATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCgg                                                                                  >  8:354231/1‑149 (MQ=255)                                                    aTTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGc                                                                                 >  4:290971/1‑149 (MQ=255)                                                     ttttGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCt                                                                                <  3:128414/149‑1 (MQ=255)                                                                  cACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGcc                                                                   >  6:143792/1‑149 (MQ=255)                                                                   aCCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGCACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGGAGGCAATACAAAAACCAgg                                                                                               >  5:5142/1‑121 (MQ=255)                                                                   aCCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAACACAGGTTTCAAG‑CGCGGCTGAGACCAACTGccc                                                                  >  8:16709/1‑148 (MQ=255)                                                                   aCCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGc                                                                    <  2:304165/147‑1 (MQ=255)                                                                    ccGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCTGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCAc                                                                 <  7:30416/149‑1 (MQ=255)                                                                    ccGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTCAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCAc                                                                 <  5:3039/149‑1 (MQ=255)                                                                           ctctTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAAc                                                                                                   >  3:364214/1‑111 (MQ=255)                                                                           ctctTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAAc                                                                                                   <  4:364214/111‑1 (MQ=255)                                                                             ctTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCCGCGGCTGAGACCAACTGCCACCtctc                                                            <  1:212544/148‑1 (MQ=255)                                                                             ctTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCtctc                                                            >  2:212544/1‑147 (MQ=255)                                                                                cgcgGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTccc                                                          <  7:354231/146‑1 (MQ=255)                                                                                    ggCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGcc                                                   <  3:255619/149‑1 (MQ=255)                                                                                          gCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCcgc                                              >  2:317019/1‑149 (MQ=255)                                                                                                                   ggCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCAc                                                                 >  5:327590/1‑105 (MQ=255)                                                                                                                   ggCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCAc                                                                 <  6:327590/105‑1 (MQ=255)                                                                                                                    gCCTTTGGGCCGTGGTGAACGTGGGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCAc                                                                 <  4:384420/104‑1 (MQ=255)                                                                                                                    gCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCAc                                                                 >  3:384420/1‑104 (MQ=255)                                                                                                                      cTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGAt                                     <  2:265656/130‑1 (MQ=255)                                                                                                                      cTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGAt                                     >  1:265656/1‑130 (MQ=255)                                                                                                                          gggCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGAcc              >  8:187174/1‑149 (MQ=255)                                                                                                                           ggCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCg             >  3:256831/1‑149 (MQ=255)                                                                                                                             ccGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGcc           >  6:267028/1‑149 (MQ=255)                                                                                                                             ccGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGcc           >  8:141538/1‑149 (MQ=255)                                                                                                                                     aaCCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCAcgg   >  5:397028/1‑149 (MQ=255)                                                                                                                                      aCCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCAcggc  <  6:397028/149‑1 (MQ=255)                                                                                                                                              gggcgggcGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGa                                      <  6:348407/105‑1 (MQ=255)                                                                                                                                              gggcgggcGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGa                                      >  5:348407/1‑105 (MQ=255)                                                                                                                                                  gggcaAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTcc                    <  1:41754/119‑1 (MQ=255)                                                                                                                                                  gggcaAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTcc                    >  2:41754/1‑119 (MQ=255)                                                                                                                                                      |                                                                                                                                      CCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGG‑‑CCTCTTCGCGGGCT‑TGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAG‑CGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGC  >  NC_002947/1970655‑1970933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.