New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 699672	128 (1.970)	7 (0.140) +AAGTTCTGACAAGTAACTGCGTACGGCGA	6/216	6.5	8.7%	intergenic (+65/‑179)	PP_t06/PP_23SD	tRNA‑Ala/23S ribosomal RNA
	?	NC_002947	5310821 =	59 (0.910)					intergenic (‑232/+3)	PP_23SG/PP_t51	23S ribosomal RNA/tRNA‑Ala
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATC  >  NC_002947/5310681‑5310960                                                                                                                                             |                                                                                                                                            cTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTT‑AAGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGa                                                                                                                                    <  4:42953/149‑1 (MQ=255)        tGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAg                                                                                                                              >  8:151506/1‑149 (MQ=255)           tCCACCAGCAGCTAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGGCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCgg                                                                                                                           <  4:115291/149‑1 (MQ=255)              accaGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGTCAGAATTCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGAt                                                                                                                        <  6:59839/149‑1 (MQ=255)                   cagTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCgg                                                                                                                           <  6:121279/141‑1 (MQ=255)                   cagTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCgg                                                                                                                           >  5:121279/1‑141 (MQ=255)                            tGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGAcct                                                                                                          >  7:251011/1‑149 (MQ=255)                                    aGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCC‑AGCGGGATCCAACCGCTGAACTCCTGCGTg                                                                                                  >  7:170247/1‑148 (MQ=255)                                     gTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTATGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTg                                                                                                  >  5:189226/1‑148 (MQ=255)                                        tataTCTATCACATATACGAATTTTTAAAGAACCATCTGACAAAACTCAGAAATCAACAATCGACGCGAATGCTCATTTCTGAGGTTGATCAACGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAag                                                                                              <  2:374653/149‑1 (MQ=25)                                         atatCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGTAAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAag                                                                                              <  8:5990/148‑1 (MQ=255)                                          tatctatcACATATCCGAATTTTTAAAGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCaa                                                                                               <  8:251011/146‑1 (MQ=255)                                              tatcACATATCCGAATTTTTAAAGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCaa                                                                                               <  7:135826/142‑1 (MQ=255)                                              tatcACATATCCGAATTTTTAAAGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCaa                                                                                               >  8:135826/1‑142 (MQ=255)                                              tatcACATATCCGAATTTTTAAAGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAaggcag                                                                                          >  3:381913/1‑147 (MQ=255)                                              tatcACATATCCGAATTTTTAAAGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAaggcag                                                                                          <  4:381913/147‑1 (MQ=255)                                                tcACATATCCTAATTTTTAAAGAACTATCTTACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCTaggcaggc                                                                                        <  4:42878/147‑1 (MQ=255)                                                          gAATTTTTAAAGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCt                                                                            >  5:202886/1‑149 (MQ=255)                                                            aTTTTTAAAGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGa                                                                          <  6:184153/149‑1 (MQ=255)                                                                ttAAAGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGATTGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTa                                                                      >  1:272715/1‑149 (MQ=255)                                                                   aaGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATgg                                                                   <  6:202886/149‑1 (MQ=255)                                                                    aGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGGGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGc                                                                  >  1:154339/1‑149 (MQ=255)                                                                     gAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGcc                                                                 >  1:333213/1‑149 (MQ=255)                                                                           tCTGACAAAAGTCAGAAATCAACATTCTACGCTAATGCGCATTTCTTAGTTTTATCATGGTAAAGCATGTGGTGGAGCC‑AGCGGGATCCAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCat                                                           <  8:170247/148‑1 (MQ=21)                                                                              gACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTAt                                                                     >  1:133111/1‑136 (MQ=255)                                                                              gACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTAt                                                                     <  2:133111/136‑1 (MQ=255)                                                                              gACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATAtt                                                        >  2:102465/1‑149 (MQ=255)                                                                               aCAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCg                                                                                                                 >  3:273918/1‑91 (MQ=255)                                                                               aCAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCg                                                                                                                 <  4:273918/91‑1 (MQ=255)                                                                                cAAAAGTCAGAAATCAACATTCGACGCGATTGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTg                                                       <  2:272715/148‑1 (MQ=255)                                                                                 aaaaGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGt                                                     <  7:85211/149‑1 (MQ=255)                                                                                   aaGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTgg                                                      >  6:217085/1‑146 (MQ=255)                                                                                   aaGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTa                                                    <  5:217085/148‑1 (MQ=255)                                                                                    actCAGAAATGAGCATTCGCGTCGAATGTTGATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAgg                                                  >  1:107785/3‑149 (MQ=21)                                                                                      tCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTc                                                >  8:44945/1‑149 (MQ=255)                                                                                       cAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCt                                               >  8:323176/1‑149 (MQ=255)                                                                                        aGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGGGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCt                                               <  2:154339/148‑1 (MQ=255)                                                                                        aGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTg                                                                                                              >  1:98970/1‑85 (MQ=255)                                                                                        aGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTg                                                                                                              <  2:98970/85‑1 (MQ=255)                                                                                        aGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTg                                              >  7:40381/1‑149 (MQ=255)                                                                                        aGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTg                                              >  3:3891/1‑149 (MQ=255)                                                                                         gAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTgg                                             <  4:3891/149‑1 (MQ=255)                                                                                              cAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTgg                                             <  4:76645/144‑1 (MQ=255)                                                                                              cAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTgg                                             >  3:76645/1‑144 (MQ=255)                                                                                               aaCATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGAt                                       <  2:333213/149‑1 (MQ=255)                                                                                                aCATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAgtgg                                                                                                                                        >  6:186285/1‑51 (MQ=255)                                                                                                aCATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAgtgg                                                                                                                                        <  5:186285/51‑1 (MQ=255)                                                                                                aCATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGAtt                                      >  8:367654/1‑149 (MQ=255)                                                                                                               gCTTATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCTGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGc                              <  4:98487/142‑1 (MQ=255)                                                                                                               gCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGAGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCTCTCTCACAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTTAACTGc                              >  3:98487/1‑142 (MQ=255)                                                                                                                 tCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGcc                     >  6:65370/1‑149 (MQ=255)                                                                                                                     ttCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGc                                                                                                 >  2:368122/1‑69 (MQ=255)                                                                                                                     ttCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGc                                                                                                 <  1:368122/69‑1 (MQ=255)                                                                                                                         gAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTaac             >  1:124875/1‑149 (MQ=255)                                                                                                                                 tCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCttt     <  7:367654/149‑1 (MQ=255)                                                                                                                                    aGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTAt   >  7:101522/1‑148 (MQ=255)                                                                                                                                    aGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATc  <  7:44945/149‑1 (MQ=255)                                                                                                                                    aGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATc  <  2:107785/149‑1 (MQ=255)                                                                                                                                     ggTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCGTGCCCACTCTTTATc  >  3:85684/1‑148 (MQ=255)                                                                                                                                             |                                                                                                                                            CTTAGCCTGATCCACCAGCAGTGAAACTGGTGTTCAGTCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGTCAGAAATCAACATTCGACGCGAATGCTCATTTCTGAGTTTGATCAAGGTAAAGCAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCTGCGTGCAAGGCAGGCGCTCTCCCAGCTGAGCTATGGCCCCGCATATTGGTAGGTCTGGGCAGATTTGAACTGCAGAAGAGCCGTCCTCACCACTCTTTATC  >  NC_002947/5310681‑5310960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.