| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 3,733,549 | Δ59,784 bp | [PP_3300]–[PP_3355] | 55 genes [PP_3300], PP_3301, PP_3302, PP_3303, PP_3304, PP_3305, PP_3306, PP_3307, paoA, paoB, paoC, kefB‑II, PP_3312, PP_3313, PP_3314, PP_3315, PP_3316, PP_3317, PP_3318, PP_3319, PP_3320, PP_3321, hemBB, PP_3323, folEB, PP_3325, PP_3326, PP_3328, PP_5599, PP_3329, PP_5600, PP_3330, PP_3331, PP_3332, PP_3333, PP_5743, PP_3335, PP_3336, PP_3337, PP_3338, PP_3339, PP_3340, nikR, nikA, nikB, nikC, nikD, nikE, PP_3348, mhpT, PP_3350, atsA, PP_3353, PP_3354, [PP_3355] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 3733549 | 3793332 | 59784 | 63 [0] | [0] 63 | [PP_3300]–[PP_3355] | [PP_3300],PP_3301,PP_3302,PP_3303,PP_3304,PP_3305,PP_3306,PP_3307,paoA,paoB,paoC,kefB‑II,PP_3312,PP_3313,PP_3314,PP_3315,PP_3316,PP_3317,PP_3318,PP_3319,PP_3320,PP_3321,hemBB,PP_3323,folEB,PP_3325,PP_3326,PP_3328,PP_5599,PP_3329,PP_5600,PP_3330,PP_3331,PP_3332,PP_3333,PP_5743,PP_3335,PP_3336,PP_3337,PP_3338,PP_3339,PP_3340,nikR,nikA,nikB,nikC,nikD,nikE,PP_3348,mhpT,PP_3350,atsA,PP_3353,PP_3354,[PP_3355] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3733548 | 0 (0.000) | 63 (0.970) | 52/274 | 0.3 | 100% | coding (237/615 nt) | PP_3300 | Transcriptional regulator, tetR family |
| ? | NC_002947 | 3793333 = | 0 (0.000) | coding (1190/1191 nt) | PP_3355 | beta‑ketothiolase | |||||
TCTTCCAGTACCTGGGCCGCCAGGTCGAGGTCGACGTCGGCATATGCCGGTAATTGCGCCCAGGCCTGATCGGCCCGCAGCCAGTGTTGCAGGACGAACTGCATGTCGCGCAGGGGCGCCTTCCAGGTCATCGGATACCTCCGGGTCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGCAGACCTGTAGCGGCCAATG > NC_002947/3793187‑3793477 | cccattatgggtacgacaagaccactgtttctgacttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatcctaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAg < 8:341295‑M2/3‑1 (MQ=255) ttatgggtacgacaagaccactgtttctgacttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCaa < 3:383779‑M2/7‑1 (MQ=255) ggtacgacaagaccactgtttctgacttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctgcagtcggcttgcgctgatcatgcagcgcCAGGCAACGaaa > 4:269158‑M2/138‑149 (MQ=255) cgacaagaccactgtttctgacttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGa < 8:344275‑M2/15‑1 (MQ=255) cgacaagaccactgtttctgacttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGa < 7:171603‑M2/15‑1 (MQ=255) gacaagaccactgtttctgacttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAgg < 2:241338‑M2/17‑1 (MQ=255) acaagaccactgtttctgacttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAggg > 8:96347‑M2/132‑149 (MQ=255) caagaccactgtttctgacttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGt > 5:362199‑M2/131‑149 (MQ=255) aagaccactgtttctgacttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGtt > 8:41104‑M2/130‑149 (MQ=255) gaccactgtttctgacttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGttt > 6:171241‑M2/128‑148 (MQ=255) cactgtttctgacttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAg > 6:79662‑M2/125‑127 (MQ=255) cactgtttctgacttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGa > 8:302090‑M2/125‑149 (MQ=255) cactgtttctgacttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtcatttgctccagtcggcttgcgctgatcatgcagagcCAGGCAACGAAATGAgtgttttaaa > 8:221043‑M2/125‑146 (MQ=255) tgtttctgacttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATca < 7:105051‑M2/28‑1 (MQ=255) gacttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAgcgc > 1:298203‑M2/115‑149 (MQ=255) acttagccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTAGGATCAGCAgcgc > 1:132756‑M2/114‑148 (MQ=255) agccaaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATg < 2:298203‑M2/39‑1 (MQ=255) aaatcgattggcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgttgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTg < 1:303465‑M2/44‑1 (MQ=255) aatcgattggcttttcaaaggcctacatctacaaattattcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTgg > 2:19104‑M2/105‑149 (MQ=255) gcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCATCGAAATGa < 7:329691‑M2/15‑1 (MQ=255) gcttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGa > 8:329691‑M2/96‑110 (MQ=255) cttttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGa < 8:227248‑M2/55‑1 (MQ=255) tttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATc < 7:128365‑M2/27‑1 (MQ=255) tttcaaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATc > 8:128365‑M2/93‑119 (MQ=255) caaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGatgcat > 3:192885‑M2/90‑149 (MQ=255) aaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGatgcatg > 6:339269‑M2/89‑149 (MQ=255) aaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGatgcat < 4:192885‑M2/60‑1 (MQ=255) aaaggcctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagagcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGatgcatg > 3:284842‑M2/89‑149 (MQ=255) ctacatctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTg < 6:362199‑M2/67‑1 (MQ=255) catctacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGa < 2:132756‑M2/70‑1 (MQ=255) tacaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGc > 5:271243‑M2/76‑148 (MQ=255) acaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATg > 7:367439‑M2/75‑146 (MQ=255) acaaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCa > 4:88494‑M2/75‑149 (MQ=255) aaaaattcttcgaatccaaacaagggatctgagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATg < 8:367439‑M2/72‑1 (MQ=255) caaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGc < 3:269158‑M2/73‑1 (MQ=255) aaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGa > 1:255277‑M2/73‑97 (MQ=255) aaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGa < 2:255277‑M2/25‑1 (MQ=255) aaattcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCa > 4:90562‑M2/73‑147 (MQ=255) attcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAgc < 7:221043‑M2/79‑1 (MQ=255) ttcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTg > 4:149532‑M2/70‑113 (MQ=255) ttcttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTg < 3:149532‑M2/44‑1 (MQ=255) cttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAgcgc > 1:46926‑M2/68‑148 (MQ=255) cttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAgcgc > 2:169882‑M2/68‑148 (MQ=255) ttcgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCaa > 5:226599‑M2/67‑149 (MQ=255) cgaatccaatcaagcgatcggagaggtgatttgcttgagtcggcttgcgctgatcatgcagcgcCAGGCAACGAATTGTGGGTTTTCGATCAGCAGCG‑CATGCCTTGGCCACCGGCGATGCTTGCCGCTGCGATGCCATAGCGCaa < 2:132116‑M2/82‑1 (MQ=255) cgaatccaaacaagcgatcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAg < 6:271243‑M2/84‑1 (MQ=255) tcggagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGa > 7:328298‑M2/48‑149 (MQ=255) gagaggttatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACgg > 2:263917‑M2/45‑149 (MQ=255) gagaggtgatttgctccagtcggctttcgctgatcatgcaccgcCAGGCAACGAAATGAGGGTTTTCGATCAGAAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTTCGATGCCATAGCGCAAGTTGCAGTCGCGCAATTCACgg > 8:321458‑M2/45‑149 (MQ=255) gagaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACgg > 8:35404‑M2/45‑149 (MQ=255) agaggtgatttgctccagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACggg < 7:321458‑M2/106‑1 (MQ=255) cagtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGAc < 5:339269‑M2/119‑1 (MQ=255) agtcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAg < 8:328298‑M2/122‑1 (MQ=255) tcggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGgc > 2:176990‑M2/26‑149 (MQ=255) ggcttgcgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGgcgc < 7:35404‑M2/126‑1 (MQ=255) gcttgcgctgatcatgcagcgcCAGGCAACGAAATGATGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGCa < 1:19104‑M2/127‑1 (MQ=255) cgctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGCAGAcc < 7:302090‑M2/131‑1 (MQ=255) ctgatcatgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGCAGACCTg > 6:294647‑M2/16‑148 (MQ=255) tgcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGCAGACCTGTAGCGGcc < 1:263917‑M2/141‑1 (MQ=255) gcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGcc < 6:261390‑M2/74‑1 (MQ=255) gcagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGcc > 5:261390‑M2/8‑81 (MQ=255) cagcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGCAGACCTGTAGCGGCCaa > 2:122957‑M2/7‑149 (MQ=255) gcgcCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGCAGACCTGTAGCGGCCAATg < 7:96347‑M2/145‑1 (MQ=255) | TCTTCCAGTACCTGGGCCGCCAGGTCGAGGTCGACGTCGGCATATGCCGGTAATTGCGCCCAGGCCTGATCGGCCCGCAGCCAGTGTTGCAGGACGAACTGCATGTCGCGCAGGGGCGCCTTCCAGGTCATCGGATACCTCCGGGTCAGGCAACGAAATGAGGGTTTTCGATCAGCAGCGCCATGCCTTGGCCACCGCCGATGCATGCCGCTGCGATGCCATAGCGCAAGTTGCCGTCGCGCAATTGACGGGCCAAGGTGTGGACCAGGCGCAGACCTGTAGCGGCCAATG > NC_002947/3793187‑3793477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |