New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 328961 = | 96 (1.340) | 5 (0.070) | 4/252 | NT | 5.6% | coding (289/1368 nt) | PP_0270 | sensor histidine kinase |
? | NC_002947 | 329005 = | 77 (1.140) | coding (245/1368 nt) | PP_0270 | sensor histidine kinase |
CCCGTACGACTGGTTGCTGCACGCAGCGCCCCCCTGATTGCCCAGGCCGACTGCCACGGCGGTACGCTGCAGGCGCCAGCCCACTACCAGCTTCACTGCGTCGAAAGCCCGCCTGCGCAAGAGCATGACGAGCGCCGCGGGCACAGGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/329111‑328961 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgggCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACGGGCACCTCTAGCGCCTGAGCGAAACGCACGTCGAACCAGATGC > NC_002947/329005‑329152 CCCGTACGACTGGTTGCTGCACGCAGCGCCCCCCTGATTGCCCAGGCCGACTGCCACGGCGGTACGCTGCAGGCGCCAGCCCACTACCAGCTTCACTGCGTCGAAAGCCCGCCTGCGCAAGAGCATGACGAGCGCCGCGGGCACAGGC < 7:118020/148‑1 CCCGTACGACTGGTTGCTGCACGCAGCGCCCCCCTGATTGCCCAGGCCGACTGCCACGGCGGTACGCTGCAGGCGCCAGCCCACTACCAGCTTCAAAACGTCGAAAGCCCGCCTGCGCAAGAGCATGACGCGCGCCGCGGGCACAGGCc > 1:358592/1‑148 CCGTACGACTGGTTGCTGCACGCAGCGCCCCCCTGATTGCCCAGGCCGACTGCCACGGCGGTACGCTGCAGGCGCCAGCCCACTACCAGCTTCACTGCGTCGAAAGCCCGCCTGCGCAAGAGCATGACGAGCGCCGCGGGCACAGGCGG < 6:229014/149‑1 ACGCAGCGCCCCCCTGATTGCCCAGGCCGACTGCCACGGCGGTACGCTGCAGGCGCCAGCCCACTACCAGCTTCACTGCGTCGAAAGCCCGCCTGCGCAAGAGCATGACGAGCGCCGCGGGCACAGGC > 3:65341/1‑128 ACGCAGCGCCCCCCTGATTGCCCAGGCCGACTGCCACGGCGGTACGCTGCAGGCGCCAGCCCACTACCAGCTTCACTGCGTCGAAAGCCCGCCTGCGCAAGAGCATGACGAGCGCCGCGGGCACAGGC < 4:65341/128‑1 TCGAAAGCCCGCCTGCGCAAGAGCATGACGAGCGCC‑‑‑‑‑‑‑‑‑‑GCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACGGG > 8:165937/1‑148 CCCGCCTGCGCAAGAGCATGACGAGCGCCGCGGGCACAGGCGGGCTTTCGACGCAGTGATGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTAt > 3:259391/1‑147 CCCGCCTGCGCAAGAGCATGACGAGCGCCGCGGGCACAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACG > 5:297397/1‑149 CCGCCTGCGCAAGAGCATGACGAGCGCCGCGGGCACAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGG < 3:28442/97‑1 CCGCCTGCGCAAGAGCATGACGAGCGCCGCGGGCACAGGCGGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGG > 4:28442/1‑97 GGGCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGAGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACGGGCACCTCTAGCGCCTGAGCGAAACGCACGTCGAACCAGAT > 4:155746/1‑149 GCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACGGGCACCTCTAGCGCCTGAGCGAAACGCACGTCGAACCAGATGC < 1:278876/149‑1 GCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACGGGCACCTCTAGCGCCTGAGCGAAACGCACGTCGAACCAGATGC < 6:407285/149‑1 GCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACGGGCACCTCTAGCGCCTGAGCGAAACGCACGTCGAAC > 3:92996/1‑142 GCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACGGGCACCTCTAGCGCCTGAGCGAAACGCACGTCGAAC < 4:92996/142‑1 GCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACGAGCACCTCTAGCGCCTGAGCGAAACGCACGTCGAACCAGATGC < 5:423304/149‑1 CCCGTACGACTGGTTGCTGCACGCAGCGCCCCCCTGATTGCCCAGGCCGACTGCCACGGCGGTACGCTGCAGGCGCCAGCCCACTACCAGCTTCACTGCGTCGAAAGCCCGCCTGCGCAAGAGCATGACGAGCGCCGCGGGCACAGGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/329111‑328961 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgggCTTTCGACGCAGTGAAGCTGGTAGTGGGCTGGCGCCTGCAGCGTACCGCCGTGGCAGTCGGCCTGGGCAATCAGGGGGGCGCTGCGTGCAGCAACCAGTCGTACGGGCACCTCTAGCGCCTGAGCGAAACGCACGTCGAACCAGATGC > NC_002947/329005‑329152 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |