New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 738610	39 (0.540)	5 (0.080)	5/244	NT	11.8%	coding (806/867 nt)	pilD	leader peptidase/N‑methyltransferase
	?	NC_002947	= 738640	39 (0.600)					coding (776/867 nt)	pilD	leader peptidase/N‑methyltransferase

ACGCCAAGCTCGACAAAGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/738452‑738610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacggcaatccCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGATGACCACTGCGGCCTTTACCCCCTGGATTCTCGGCCTGACCGGCGGCATTGGTAG  <  NC_002947/738640‑738494                                                                                                                                                                                                                                                                                                                    ACGCCAAGCTCGACAAAGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAG                                                                                                                                                                >  2:338875/1‑148      AAGCTCGACAAAGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGG                                                                                                                                                           >  1:186271/1‑148          TCGACAAAGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATC                                                                                                                                                      >  1:254747/1‑149           CGACAAATAGCTCGGCAGCCGCGCTTTAACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCAAGGGCGTAAAAGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATAATTCATAACCCCAGAGCACGGAAATC                                                                                                                                                      >  2:348653/1‑148                                                AATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCGTGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGC                                                                                                                >  7:128333/1‑149                                                 ATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCC                                                                                                               <  1:52807/149‑1                                                  TGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCG                                                                                                              <  5:390192/149‑1                                                    CCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCGTGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGT                                                                                                             <  8:128333/148‑1                                                     CGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGC                                                                                                           <  1:251197/149‑1                                                                                                                                                       CGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGATGACCACTGCGGCCTTTACCCCCTGGATTCTCGGCCTGACCGGCGGCA         <  5:438821/149‑1                                                                                                                                                        GGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGATGACCACTGCGGCCTTTACCCCCTGGATTCTCGGCCTGACCGGCGGCAT        >  3:407991/1‑149                                                                                                                                                        GGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGATGACCACTGCGGCCTTTACCCCCTGGATTCTCGGCCTGACCGGCGGCAT        <  2:17818/149‑1                                                                                                                                                          CAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGATGACCACTGCGGCCTTTACCCCCTGGATTCTCGGCCTGACCGGCGGCATTG      >  6:198295/1‑149                                                                                                                                                           AATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGATGACCACTGCGGCCTTTACCCCCTGGATTCTCGGCCTGACCGGCGGCATTGG     <  6:430040/149‑1                                                                                                                                                            ATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGATGACCACTGCGGCCTTTACCCCCTGGATTCTCGGCCTGACCGGCGGCATTGGT    <  5:153854/149‑1                                                                                                                                                             taCCGTTTGGCCCTTATCTGGCAATTGCGTGGTTGATTGCCGTGATCTGGGGTGATGAAATATAAGACTCATACATGCAACTGCTTGGATACTGATGACCACTGCGGCCTTTACCCCCTTGATTCTCGGCCTGACCGGCGGCATTGGTA   <  7:320131/147‑1                                                                                                                                                              CCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGATGACCACTGCGGCCTTTACCCCCTGGATTCTCGGCCTGACCGGCGGCATTGGTAG  >  2:164913/1‑149                                                                                                                                                              CCCGTTTGGCCCTTATCTGGCAAGTGCGGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGATGCCCACTGCGGCCTTTACACCCAGGATTCTCGGCCTGACCTGCGGCATTGGTAG  >  4:58504/1‑149                                                                                                                                                                                                                                                                                                                    ACGCCAAGCTCGACAAAGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/738452‑738610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacggcaatccCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGATGACCACTGCGGCCTTTACCCCCTGGATTCTCGGCCTGACCGGCGGCATTGGTAG  <  NC_002947/738640‑738494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.