New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 738610	39 (0.540)	5 (0.080)	5/244	NT	11.8%	coding (806/867 nt)	pilD	leader peptidase/N‑methyltransferase
	?	NC_002947	= 738640	39 (0.600)					coding (776/867 nt)	pilD	leader peptidase/N‑methyltransferase

CTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGC  >  NC_002947/738494‑738784                                                                                                                                                    |                                                                                                                                                 cTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGgg                                                                                                                                                >  2:164913‑M2/1‑147 (MQ=255) cTACCAATGCCGCAGGTCAGGCCGAGAATCCTGGGTGTAAAGGCCGCAGTGGGCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCACTTGCCAG‑ATAAGGGCCAAACGgg                                                                                                                                                >  4:58504‑M2/1‑147 (MQ=255)  tACCAATGCCGCCGGTCAGGCCGAGAATCAAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGTCTTATATTTCATCACCCCAGATCACGGCAATCAACCACGCAATTGCCAG‑ATAAGGGCCAAACGgta                                                                                                                                               <  7:320131‑M2/149‑4 (MQ=255)   aCCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGggat                                                                                                                                              <  5:153854‑M2/149‑5 (MQ=255)    ccAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGggatt                                                                                                                                             <  6:430040‑M2/149‑6 (MQ=255)     cAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGggattg                                                                                                                                            >  6:198295‑M2/1‑143 (MQ=255)       aTGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGggattgcc                                                                                                                                          <  2:17818‑M2/149‑9 (MQ=255)       aTGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGggattgcc                                                                                                                                          >  3:407991‑M2/1‑141 (MQ=255)        tGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGggattgccg                                                                                                                                         <  5:438821‑M2/149‑10 (MQ=255)            gccgGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGcc                                                                                                                                     <  2:254747/149‑1 (MQ=255)                gTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATg                                                                                                                                 <  1:17818/149‑1 (MQ=255)                 tCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATgg                                                                                                                                <  5:430040/149‑1 (MQ=255)                     gCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATc                                                                                                                            >  2:90515/1‑149 (MQ=255)                         agaATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCgg                                                                                                                        >  3:3976/1‑149 (MQ=255)                          gaATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGc                                                                                                                       <  1:338875/149‑1 (MQ=255)                               cAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGATCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGaaaa                                                                                                                  <  4:348089/149‑1 (MQ=255)                               cAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGaaaa                                                                                                                  <  6:29780/149‑1 (MQ=255)                                     gTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCgg                                                                                                                        >  2:23969/1‑137 (MQ=255)                                     gTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCgg                                                                                                                        <  1:23969/137‑1 (MQ=255)                                      tAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACgcagca                                                                                                           <  5:291674/149‑1 (MQ=255)                                      tAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACgcagca                                                                                                           <  7:359707/149‑1 (MQ=255)                                        aaGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAgg                                                                                                         <  8:180640/149‑1 (MQ=255)                                               cAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGc                                                                                                  <  4:3976/149‑1 (MQ=255)                                                   ggTCATCAGTATTCAAGCAGTTGCATGTTTGAGGCGTATATTTCATCACCCCAGAGGAAGGCAATCCACCCCGCAATTGCCAGTCTAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCa                                                                                                <  1:348653/148‑1 (MQ=255)                                                   ggTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCaaa                                                                                              >  7:392753/1‑149 (MQ=255)                                                       atcaGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAgc                                                                                          >  8:393559/1‑149 (MQ=255)                                                         caGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAgcgc                                                                                        >  1:229508/1‑149 (MQ=255)                                                              tCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGccccc                                                                                    <  6:438821/148‑1 (MQ=255)                                                               ccAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGccccccc                                                                                  >  4:187161/1‑147 (MQ=255)                                                               ccAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGCCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGCATAGCCTTGCCCATGGCATCCCCGCGAAAACGCAGCACGCACAGGCCAAACAGCCCCCacac                                                                                  >  3:311729/1‑149 (MQ=255)                                                                 aaGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAgcgcgcgcgc                                                                                  >  2:281398/1‑141 (MQ=255)                                                                      gTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACcgac                                                                           <  2:229508/149‑1 (MQ=255)                                                                         gCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACcgacga                                                                         <  8:327255/148‑1 (MQ=255)                                                                          cATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCccacca                                                                                >  7:74431/1‑140 (MQ=255)                                                                                 gAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCGCGCCCCCGACGCCAAcagcag                                                                >  2:307131/1‑149 (MQ=255)                                                                                  aGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACagcagc                                                               <  2:186271/149‑1 (MQ=255)                                                                                   ggCGTATATTTCATCACCCCATAGCACTGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACTTGATTGCCGTGCCCATTGCATCCCGGCGAAAACGCAGCAGGCACTGGCCAAACAGCGCCCCCACCACCGACGACAACtgcagc                                                               <  8:266293/148‑1 (MQ=255)                                                                                            ttCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCACACAGCCCCGCCCCCCCCGCCGCCGGCCGCCgcggcagcggca                                                     >  8:137502/1‑149 (MQ=255)                                                                                                  aCCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACATCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCt                                               <  1:90515/149‑1 (MQ=255)                                                                                                  aCCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCt                                               <  7:393559/149‑1 (MQ=255)                                                                                                         agCACGGCAATCCAACCCACAATTGACAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCAAAGGCCAAACAGAGCCACCACGACCTACGACAACAGCAGCGTCAACGGCAGCTCCTGCCAAcc                                        >  2:235617/1‑149 (MQ=255)                                                                                                          gCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGggattgccgtgctctggggtgatgaaatatacgcctcatacatgcaactgcttggatactgatgaccactgcggcctttaccccctggattctcggcctgaccggcg                                       <  1:251197‑M2/149‑108 (MQ=255)                                                                                                            aCGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGggattgccgtgctctggggtgatgaaatatacgcctcatacacgcaactgcttggatactgatgaccactgcggcctttaccccctggattctcggcctgaccggcgg                                      <  8:128333‑M2/148‑109 (MQ=255)                                                                                                             cGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGggattgccgtgctctggggtgatgaaatatacgcctcatacatgcaactgcttggatactgatgaccactgcggcctttaccccctggattctcggcctgaccggcggca                                    <  5:390192‑M2/149‑111 (MQ=255)                                                                                                              ggCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGggattgccgtgctctggggtgatgaaatatacgcctcatacatgcaactgcttggatactgatgaccactgcggcctttaccccctggattctcggcctgaccggcggcat                                   <  1:52807‑M2/149‑112 (MQ=255)                                                                                                              ggCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCG‑CCCCACCACCGCCGACAACCGCCGCGTCCACGGCCGCACCTGCGAAccccccac                                  >  6:120509/1‑147 (MQ=255)                                                                                                               gCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGggattgccgtgctctggggtgatgaaatatacgcctcatacacgcaactgcttggatactgatgaccactgcggcctttaccccctggattctcggcctgaccggcggcatt                                  >  7:128333‑M2/1‑37 (MQ=255)                                                                                                                cAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCGCACCGCCGCCGCCCACAGCCGCGGCCACCGCCGCACCGGCcccccccccccg                                 >  3:45723/1‑147 (MQ=255)                                                                                                                     cACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCACGcccc                            <  5:185012/149‑1 (MQ=255)                                                                                                                      aCCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGgca                                                     <  6:362959/123‑1 (MQ=255)                                                                                                                      aCCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGgca                                                     >  5:362959/1‑123 (MQ=255)                                                                                                                        cccGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGAt                         <  5:66954/149‑1 (MQ=255)                                                                                                                            cAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGATCAgc                     <  8:40713/149‑1 (MQ=255)                                                                                                                                    aG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCGCGCCCCGAGGGCAACAGCGGCGTCAACGGCAGCACGGGACAACCCCCCCCCGCCGCGATAAGGGCCATGAg             >  6:391495/1‑149 (MQ=255)                                                                                                                                    aG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAg             >  2:422799/1‑149 (MQ=255)                                                                                                                                                aaaCGGTATTGCCGTGCCCATGCCAACCCGGCGAAAACGCATCATGCAAAGGCCAAACACCGCCCCCACAAACGACTACAACAGCAGCGTCAACGGCATCACCTGCCAACACCCCCACGACCCGATCATCGCCATCAGCTTTAAATCGc  <  8:320131/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 CTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAG‑ATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGATCAGCGCCATCAGCTTGAAATCGC  >  NC_002947/738494‑738784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.