New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 76935164 (0.890)5 (0.070) 4/252 NT 7.3% coding (1429/1440 nt) mmuP S‑methyl‑L‑methionine transporter
?NC_002947 = 769381 67 (1.000)intergenic (+19/‑27) mmuP/PP_0661 S‑methyl‑L‑methionine transporter/transcriptional regulator AmpR

ACTGGCCTGCGTCGGCATTGCCTTCGACCCAGCTCAGCGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/769197‑769351
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggttccgGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGCCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGCAATGAAGGGCAAGCCGAAGTACAGGGCAACCCG  <  NC_002947/769381‑769234
                                                                                                                                                                                                                                                                                                               
ACTGGCCTGCGTCGGCATTGCCTTCGACCCAGCTCAGCGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAG                                                                                                                                                            >  6:312970/1‑149
 CTGGCCTGCGTCGGCATTGCCTTCGACCCAGCTCAGCGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAG                                                                                                                                                            <  6:9054/148‑1
  TGGCCTGCGTCGGCATTGCCTTCGACCCAGCTCAGCGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGT                                                                                                                                                          >  4:257725/1‑149
      CTGCGTCGGCATTGCCTTCGACCCAGCTCAGCGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCG                                                                                                                                                      <  2:68870/149‑1
      CTGCGTCGGCATTGCCTTCGACCCAGCTCAGCGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCC                                                                                                                                                       >  7:48863/1‑148
          GTCGGCATTGCCTTCGACCCAGCTCAGCGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGGTGG                                                                                                                                                  >  7:221677/1‑149
                      TTCGACCCAGCTCAGCGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGGTGGCCTAGTATCACC                                                                                                                                      >  6:109226/1‑149
                                             CCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTG                                                                                                               <  8:221677/149‑1
                                                 TACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGG                                                                                                             <  5:109226/147‑1
                                                                TTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGG                                                                                                             >  3:312065/1‑132
                                                                TTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGG                                                                                                             <  4:312065/132‑1
                                                                                                                                                    GGTTCCGGTGGCCTAGTATGACCTGCTAAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCTTGGCCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGTCAATGAAGGGCAAGCCGAAGTACAGGG         <  4:328470/148‑1
                                                                                                                                                    GGTTCCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGCCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGCAATGAAGGGCAAGCCGAAGTACAGGG         <  5:61456/148‑1
                                                                                                                                                    GGTTCCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGCCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGCAATGAAGGGCAAGCCGAAGTACAGG          <  6:221756/147‑1
                                                                                                                                                      gTCCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGCCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGCAATGAAGGGCAAGCCGAAGTACAGGGCAA      <  1:177772/148‑1
                                                                                                                                                      TTCCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGCCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGCAATGAAGGGCAAGCCGAAGTACAGGGCAA      >  5:405542/1‑149
                                                                                                                                                       TCCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGGCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGCA                                  <  5:33511/120‑1
                                                                                                                                                       TCCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGACGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGCA                                  >  6:33511/1‑120
                                                                                                                                                          GGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGCCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGCAATGAAGGGCAAGCCGAAGTACAGGGCAACCCG  >  1:194562/1‑149
                                                                                                                                                                                                                                                                                                               
ACTGGCCTGCGTCGGCATTGCCTTCGACCCAGCTCAGCGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/769197‑769351
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggttccgGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGCCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGCAATGAAGGGCAAGCCGAAGTACAGGGCAACCCG  <  NC_002947/769381‑769234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.