| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1942150 | 65 (0.910) | 4 (0.060) | 3/254 | NT | 5.9% | coding (692/864 nt) | betX | choline/betaine/carnitine ABC transporter substrate‑binding protein BetX |
| ? | NC_002947 | = 1942176 | 67 (0.990) | coding (718/864 nt) | betX | choline/betaine/carnitine ABC transporter substrate‑binding protein BetX | |||||
AACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAGGCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1941997‑1942150‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggaactCCGCCACTTCCGGTGCCTTGGTGGCCAGTTCCTTGCTGCCGATGCTGTTCACGGTTTCTGCCGCGCCATATACGCCTTTCGGGTCTTCGAGGAACTTCAGCTTCCACTTGGCGAACATCCAGTGCGGAACCCAGCCGGTCACCGC < NC_002947/1942176‑1942032 AACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAGGCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAG > 1:406305/1‑149 ACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAGGCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACTCCGCCACTTCCGGTGCCTTGGTGGCCAGTTCCTTG < 8:255720/148‑1 CCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAGGCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACTCCGCCACTTCCGGTGCCTTGGTGGCCAGTTCCTTGCT < 5:438394/149‑1 CCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAGGCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACTCCGCCACTTCCGGTGCCTTGGTGGCCAGTTCCTTGCT > 7:256357/1‑122 CCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAGGCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACTCCGCCACTTCCGGTGCCTTGGTGGCCAGTTCCTTGCT < 8:256357/122‑1 AGGAACTCCGCCACTTCCGGTGCCTTGGTGGCCAGTTCCTTGCTGCCGATGCTGTTCACGGTTTCTGCCGCGCCATATACGCCTTTCGGGTCTTCGAGGAACTTCAGCTTCCACTTGGCGAACATCCAGTGCGGAACCCAGCCGGTCAC > 7:81468/1‑149 GAACTCCGCCACTTCCGGTGCCTTGGTGGCCAGTTCCTTGCTGCCGATGCTGTTCACGGTTTCTGCCGCGCCATATACGCCTTTCGGGTCTTCGAGGAACTTCAGCTTCCACTTGGCGAACATCCAGTGCGGAACCCAGCCGGTCACCG > 6:206172/1‑149 GAACTCCGCCACTTCCGGTGCCTTGGTGGCCAGTTCCTTGCTGCCGATGCTGTTCACGGTTTCTGCCGCGCCATATACGCCTTTCGGGTCTTCGAGGAACTTCAGCTTCCACTTGGCGAACATCCAGTGCGGAACCCAGCCGGTCACCG < 7:393571/149‑1 AACTCCGCCACTTCCGGTGCCTTGGTGGCCAGTTCCTTGCTGCCGAAGCTGTTCACGGTTTCTGCCGCGCCATATACGCCTTTCGGGTCTTCGAGGAACTTCAGCTTCCACTTGGCGAACATCCAGTGCGGAACCCAGCCGGTCACCGC < 5:141716/149‑1 AACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAGGCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1941997‑1942150‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggaactCCGCCACTTCCGGTGCCTTGGTGGCCAGTTCCTTGCTGCCGATGCTGTTCACGGTTTCTGCCGCGCCATATACGCCTTTCGGGTCTTCGAGGAACTTCAGCTTCCACTTGGCGAACATCCAGTGCGGAACCCAGCCGGTCACCGC < NC_002947/1942176‑1942032 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |