New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 197547588 (1.230)6 (0.090) 5/258 NT 7.3% coding (407/1104 nt) pheA bifunctional chorismate mutase/prephenate dehydratase
?NC_002947 = 1975492 67 (0.970)coding (424/1104 nt) pheA bifunctional chorismate mutase/prephenate dehydratase

TCATGTCGTCGTGCCTGGCCCTGGAAGAGCCGCTGAAAATCGCCTACCTCGGCCCTGAAGGTACCTTCACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1975325‑1975475
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagtTGACGGCACCGGCCGCCACTTCACGGAACACTTCGTCGATGGCCGCCATCGGCCGACTGATCACCGCGTGGCCGAAGTGCTTCATGGCCGCCGCCTGGGTGAAGGTACCTTCAGGGCCGAGGTAGGCGATTTTCAGCGGCTCTTC  <  NC_002947/1975492‑1975348
                                                                                                                                                                                                                                                                                                        
TCATGTCGTCGTGCCTGGCCCTGGAAGAGCCGCTGAAAATCGCCTACCTCGGCCCTGAAGGTACCTTCACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAA                                                                                                                                                     <  3:386047/149‑1
   TGTCGTCGTGCCTGGCCCTGGAAGAGCCGCTGAAAATCGCCTACCTCGGCCCTGAAGGTACCTTCACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTT                                                                                                                                                  >  3:345826/1‑149
                          GAGCCGCTGAAAATCGCCTACCTCGGCCCTGAAGGTACCTTCACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTTGACGGCACCGGCCGCCACTTCAC                                                                                                                           <  4:345826/149‑1
                              CGCTGAAAATCGCCTACCTCGGCCCTGAAGGTACCTTCACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTTGACGGCACCGGCCGCCACTTCACGGAA                                                                                                                       <  8:148171/149‑1
                                                                CTTCACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTTGACGGCACCGGCCGCCACTTCACGG                                                                                                                         >  7:219527/1‑113
                                                                CTTCACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTTGACGGCACCGGCCGCCACTTCACGG                                                                                                                         <  8:219527/113‑1
                                                                     CCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTTGACGGCACCGGCCGCCACTTCACGG                                                                                                                         <  5:434453/108‑1
                                                                     CCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTTGACGGCACCGGCCGCCACTTCACGG                                                                                                                         >  6:434453/1‑108
                                                                                                                                                   AAGTTGACGGCACCGGCCGCCACTTCACGGAACACTTCGTCGATGGCCGCCATCGGCCGACTGATCACCGCGTGGCCGAAGTGCTTCATGGCCGCCGCCTGGGTGAAGGTACCTTCAGGGCCGAGGTAGGCGATTTTCAGCGGCTCTTC  >  8:17137/1‑149
                                                                                                                                                                                                                                                                                                        
TCATGTCGTCGTGCCTGGCCCTGGAAGAGCCGCTGAAAATCGCCTACCTCGGCCCTGAAGGTACCTTCACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1975325‑1975475
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagtTGACGGCACCGGCCGCCACTTCACGGAACACTTCGTCGATGGCCGCCATCGGCCGACTGATCACCGCGTGGCCGAAGTGCTTCATGGCCGCCGCCTGGGTGAAGGTACCTTCAGGGCCGAGGTAGGCGATTTTCAGCGGCTCTTC  <  NC_002947/1975492‑1975348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.