New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2130654 =	60 (0.840)	4 (0.060)	4/258	NT	6.7%	coding (1545/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	2130733 =	54 (0.780)					coding (1466/2496 nt)	fimD	type I pili subunit FimD

ACGTTCAGCGGCAGTCGCCGCAGCCGCCTGGAGGCCTCGGTCCACCAGAGCCTGGGCAGGACCAGCTCGCTGACCCTGACGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2130737‑2130654 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgAACGTAGTGTCCTGGCTGCGCTGGCGCACCACTTCATCGAAGTCACGGTAGCCTTGGGTCGAATAGCGATATCCGGCAAAGCGCAGGTTGGTTTGAGTGGTGAAGGCCTTGGCATACTTCAGGGCGTAACTGGAACCCTGCACCTC  >  NC_002947/2130733‑2130878                                                                                                                                                                                                                                        ACGTTCAGCGGCAGTCGCCGCAGCCGCCTGGAGGCCTCGGTCCACCAGAGCCTGGGCAGGACCAGCTCGCTGACCCTGACGCTGAACGTAGTGTCCTGGCTGCGCTGGCGCACCACTTCATCGAAGTCACGGTAGCCTTGGGTCGAA                                                                                     >  3:310612/1‑147    TTCAGCGGCAGTCGCCGCAGCCGCCTGGAGGCCTCGGTCCACCAGAGCCTGGGCAGGACCAGCTCGCTGACCCTGACGCTGAACGTAGTGTCCTGGCTGCGCTGGCGCACCACTTCATCGAAGTCACGGTAGCCTTGGGTCGAATAGC                                                                                 >  3:81041/1‑148                            CTGGAGGCCTCGGTCCACCAGAGCCTGGGCAGGACCAGCTCGCTGACCCTGACGCTGAACGTAGTGTCCTGGCTGCGCTGGCGCACCACTTCATCGAAGTCACGGTAGCCTTGGGTCGAATAGCGATATCCGGCAAAGCGCAGGTTGGT                                                        <  4:81041/149‑1                                                                         ACCCTGACGCTGAACGTAGTGTCCTGGCTGCGCTGGCGCACCACTTCATCGAAGTCACGGTAGCCTTGGGTCGAATAGCGATATCCGGCAAAGCGCAGGTTGGTTTGAGTGGTGAAGGCCTTGGCATACTTCAGGGCGTAACTGGAA             <  4:310612/147‑1                                                                                  CTGAACGTAGTGTCCTGGCTGCGCTGGCGCACCACTTCATCGAAGTCACGGTAGCCTTGGGTCGAATAGCGATATCCGGCAAAGCGCAGGTTGGTTTGAGTGGTGAAGGCCTTGGCATACTTCAGGGCGTAACTGGAACCCTGCACCTC  >  1:338603/1‑149                                                                                                                                                                                                                                        ACGTTCAGCGGCAGTCGCCGCAGCCGCCTGGAGGCCTCGGTCCACCAGAGCCTGGGCAGGACCAGCTCGCTGACCCTGACGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2130737‑2130654 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgAACGTAGTGTCCTGGCTGCGCTGGCGCACCACTTCATCGAAGTCACGGTAGCCTTGGGTCGAATAGCGATATCCGGCAAAGCGCAGGTTGGTTTGAGTGGTGAAGGCCTTGGCATACTTCAGGGCGTAACTGGAACCCTGCACCTC  >  NC_002947/2130733‑2130878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.