New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2317642 =	55 (0.770)	4 (0.060)	4/256	NT	7.3%	coding (1446/1548 nt)	PP_2038	long‑chain‑fatty‑acid‑‑CoA ligase
	?	NC_002947	2317686 =	49 (0.720)					coding (1490/1548 nt)	PP_2038	long‑chain‑fatty‑acid‑‑CoA ligase

GATGATCTGCTGGGCCTTTTCGCTTGGCTGATACATGGTCGTTCCTCGTGTCAGATACGGCGTTCGCTGTTTTGCCAGTAGGCGTCACGGATCAACCGGCGCACCACCTTGCCGTTGGGGTTTTTCGGCAGCTCGCTGACGAAGTCCACGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2317794‑2317642 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcaAGGTGGTGCGCCGGTTGATCCGTGACGCCTACTGGCAAAACAGCGAACGCCGTATCTGACACGAGGAACGACCATGTATCAGCCAAGCGAAAAGGCCCAGCAGATCATCGAGGCCATCAGTGGCTTCGTTCGCAACGAAATC  >  NC_002947/2317686‑2317827                                                                                                                                                                                                                                                                                                         GATGATCTGCTGGGCCTTTTCGCTTGGCTGATACATGGTCGTTCCTCGTGTCAGATACGGCGTTCGCTGTTTTGCCAGTAGGCGTCACGGATCAACCGGCGCACCACCTTGCCGTTGGGGTTTTTCGGCAGCTCGCTGACGAAGTCCAC                                                                                                                                                    <  4:2948/149‑1    GATCTGCTGGGCCTTTTCGCTTGGCTGATACATGGTCGTTCCTCGTGTCAGATACGGCGTTCGCTGTTTTGCCAGTAGGCGTCACGGATCAACCGGCGCACCACCTTGCCGTTGGGGTTTTTCGGCAGCTCGCTGACGAAGTCCACGG                                                                                                                                                  >  4:288488/1‑148                                                                                                          ACCTTGCCGTTGGGGTTTTTCGGCAGCTCGCTGACGAAGTCCACGGCAAGGTGGTGCGCCGGTTGATCCGTGACGCCTACTGGCAAAACAGCGAACGCCGTATCTGACACGAGGAACGACCATGTATCAGCCAAGCGAAAAGGCCCAG                                            >  3:288403/1‑148                                                                                                           CCTTGCCGTTGGGGTTTTTCGGCAGCTCGCTGACGAAGTCCACGGCAAGGTGGTGCGCCGGTTGATCCGTGACGCCTACTGGCAAAACAGCGAACGCCGTATCTGACACGAGGAACGACCATGTATCAGCCAAGCGAAAAGGCCCAG                                            >  8:213382/1‑147                                                                                                            CTTGCCGTTGGGGTTTTTCGGCAGCTCGCTGACGAAGTCCACGGCAAGGTGGTGCGCCGGTTGATCCGTGACGCCTACTGGCAAAACAGCGAACGCCGTATCTGACACGAGGAACGACCATGTATCAGCCAAGCGAAAAGGCCCAG                                            >  5:8499/1‑146                                                                                                                                 CAGCTCGCTGACGAAGTCCACGGCAAGGTGGTGCGCCGGTTGATCCGTGACGCCTACTGGCAAAACAGCGAACGCCGTATCTGACACGAGGAACGACCATGTATCAGCCAAGCGAAAAGGCCCAGCAGATCATCGAGGCCATCAGTG                      <  6:8499/147‑1                                                                                                                                                   CACGGCAAGGTGGTGCGCCGGTTGATCCGTGACGCCTACTGGCAAAACAGCGAACGCCGTATCTGACACGAGGAACGACCATGTATCAGCCAAGCGAAAAGGCCCAGCAGATCATCGAGGCCATCAGTGGCTTCGTTCGCAACGAAATC  <  4:288403/149‑1                                                                                                                                                                                                                                                                                                         GATGATCTGCTGGGCCTTTTCGCTTGGCTGATACATGGTCGTTCCTCGTGTCAGATACGGCGTTCGCTGTTTTGCCAGTAGGCGTCACGGATCAACCGGCGCACCACCTTGCCGTTGGGGTTTTTCGGCAGCTCGCTGACGAAGTCCACGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2317794‑2317642 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcaAGGTGGTGCGCCGGTTGATCCGTGACGCCTACTGGCAAAACAGCGAACGCCGTATCTGACACGAGGAACGACCATGTATCAGCCAAGCGAAAAGGCCCAGCAGATCATCGAGGCCATCAGTGGCTTCGTTCGCAACGAAATC  >  NC_002947/2317686‑2317827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.