| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2522920 = | 59 (0.820) | 4 (0.060) | 4/254 | NT | 6.5% | coding (4171/4446 nt) | PP_2212 | leucine‑rich repeat‑containing protein |
| ? | NC_002947 | 2522968 = | 59 (0.870) | coding (4219/4446 nt) | PP_2212 | leucine‑rich repeat‑containing protein | |||||
CAAGACAGGACGTTGAGCCTGCAGCTCAAGCGTGCGCCGAGTGTAATCCGCACTGAGGGCATCGAACATTTGGTCATGTTGCTGGCGCAGGTAACGGCGCCAGAACGCGCGCTGGCTCAGGCTATCGGTCAGGCCCTCGATGGTCTGCGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2523072‑2522920‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcgTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAA > NC_002947/2522968‑2523114 CAAGACAGGACGTTGAGCCTGCAGCTCAAGCGTGCGCCGAGTGTAATCCGCACTGAGGGCATCGAACATTTGGTCATGTTGCTGGCGCAGGTAACGGCGCCAGAACGCGCGCTGGCTCAGGCTATCGGTCAGGCCCTCGATGGTCTGCG > 3:37953/1‑149CAAGACAGGACGTTGAGCCTGCAGCTCAAGCGTGCGCCGAGTGTAATCCGCACTGAGGGCATCGAACATTTGGTCATGTTGCTGGCGCAGGTAACGGCGCCAGAACGCGCGCTGGCTCAGGCTATCGGTCAGGCCCTCGATGGTCTGCG > 7:58956/1‑149 AAGACAGGACGTTGAGCCTGCAGCTCAAGCGTGCGCCGAGTGTAATCCGCACTGAGGGCATCGAACATTTGGTCATGTTGCTGGCGCAGGTAACGGCGCCAGAACGCGCGCTGGCTCAGGCTATCGGTCAGGCCCTCGATGGTCTGCGC > 1:339055/1‑149 gagAGGACGTTGAGCCTGCAGCTCAAGCGTGCGCCGAGTGTAATCCGCACTGAGTGCATCGAACATTTGGTCATGTTGCTGGCGCAGGTAACGGCGCCAGAACGCGCGCTGGCTCAGGCTATCGGTCAGGCCCTCGATGGTCTGCGCGC < 7:191858/146‑1 GACAGGACGTTGAGCCTGCAGCTCAAGCGTGCGCCGAGTGTAATCCGCACTGAGGGCATCGAACATTTGGTCATGTTGCTGGCGCAGGTAACGGCGCCAGAACGCGCGCTGGCTCAGGCTATCGGTCAGGCCCTCGATGGTCTGCGCGC < 3:209739/149‑1 CGCGCGCTGGCTCAGGCTATCGGTCAGGCCCTCGATGGTCTGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGT > 4:52514/1‑149 GCGCTGGCTCAGGCTATCGGTCAGGCCCTCGATGGTCTGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTT > 5:11933/1‑149 CGCTGGCTCAGGCTATCGGTCAGGCCCTCGATGGTCTGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTG < 3:52514/149‑1 TCAGGCCCTCGATGGTCTGCGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGC < 6:11933/149‑1 CGCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACA < 4:425689/149‑1 GCGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAG < 2:363761/149‑1 CGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGG < 5:339537/149‑1 CGCGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAG > 1:305299/1‑148 CGTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTGCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGGCTTGGCGCCGGCGGCCGTCGAGCAGCAACTACGCCGGCTACAGGAA < 3:334459/149‑1 CAAGACAGGACGTTGAGCCTGCAGCTCAAGCGTGCGCCGAGTGTAATCCGCACTGAGGGCATCGAACATTTGGTCATGTTGCTGGCGCAGGTAACGGCGCCAGAACGCGCGCTGGCTCAGGCTATCGGTCAGGCCCTCGATGGTCTGCGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2523072‑2522920‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcgTTCTGGCGCCGTTACCTGCGCCAGCAACATGACCAAATGTTCGATGCCCTCAGTGCGGATTACACTCGGCGCACGCTTGAGCTGCAGGCTCAACGTCCTGTCTTGGCGCCGGCGGCCTTCGAGCAGCAACTACGCCGGCTACAGGAA > NC_002947/2522968‑2523114 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |