| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2601777 | 54 (0.750) | 4 (0.060) | 4/252 | NT | 7.1% | coding (1254/1575 nt) | PP_2279 | head‑to‑tail joining protein |
| ? | NC_002947 | = 2601810 | 54 (0.800) | coding (1287/1575 nt) | PP_2279 | head‑to‑tail joining protein | |||||
GTGACAGCCGAAGAAATCCGGTACATGGCCGGGGAATTGGAAGCCGCCTTGGGCGGTGTCTATTCCATCCTCAGCCAAGAATTCCAGCTTCCGCTAGTCAACCGCATCATGTTCTCGATGCAGCGCCGCAAAAAGCTCCCCGAACTGCCCAAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2601622‑2601777‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaagggcCTCCATACCCGTCACAATGGTGGGGCTAACAGTGCCCTTGGGCAGTTCGGGGAGCTTTTTGCGGCGCTGCATCGAGAACATGATGCGGTTGACTAGCGGAAGCTGGAATTCTTGGCTGAGGATGGAATAGACACCGCCCAAGGCGGCT < NC_002947/2601810‑2601663 GTGACAGCCGAAGAAATCCGGTACATGGCCGGGGAATTGGAAGCCGCCTTGGGCGGTGTCTATTCCATCCTCAGCCAAGAATTCCAGCTTCCGCTAGTCAACCGCATCATGTTCTCGATGCAGCGCCGCAAAAAGCTCCCCGAACTGCC > 1:233777/1‑149GTGACAGCCGAAGAAATCCGGTACATGGCCGGGGAATTGGAAGCCGCCTTGGGCGGTGTCTATTCCATCCTCAGCCAAGAATTCCAGCTTCCGCTAGTCAACCGCATCATGTTCTCGATGCAGCGCCGCAAAAAGCTCCCCGAACTGCC > 1:270339/1‑149 GACAGCCGAAGAAATCCGGTACATGGCCGGGGAATTGGAAGCCGCCTTGGGCGGTGTCTATTCCATCCTCAGCCAAGAATTCCAGCTTCCGCTAGTCAACCGCATCATGTTCTCGATGCAGCGCCGCAAAAAGCTCCCCGAACTGCCC > 2:354266/1‑148 CAGCCGAAGAAATCCGGTACATGGCCGGGGAATTGGAAGCCGCCTTGGGCGGTGTCTATTCCATCCTCAGCCAAGAATTCCAGCTTCCGCTAGTCAACCGCATCATGTTCTCGATGCAGCGCCGCAAAAAGCTCCCCGAACTGCCCAAG < 2:206594/149‑1 GGAATTGGAAGCCGCCTTGGGCGGTGTCTATTCCATCCTCAGCCAAGAATTCCAGCTTCCGCTAGTCAACCGCATCATGTTCTCGATGCAGCGCCGCAAAAAGCTCCCCGAACTGCCCAAGGGCCTCCATACCCGTCACAATGGTGGGG < 2:423786/149‑1 GGAAGCCGCCTTGGGCGGTGTCTATTCCATCCTCAGCCAAGAATTCCAGCTTCCGCTAGTCAACCGCATCATGTTCTCGATGCAGCGCCGCAAAAAGCTCCCCGAACTGCCCAAGGG > 4:47402/1‑117 CCTTGGGCGGTGTCTATTCCATCCTCAGCCAAGAATTCCAGCTTCCGCTAGTCAACCGCATCATGTTCTCGATGCAGCGCCGCAAAAAGCTCCCCGAACTGCCCAAGGGCCTCCATACCCGTCACAATGGTGGGGCTAACAGTGCCCTT > 6:47191/1‑149 GGGCGGTGTCTATTCCATCCTCAGCCAAGAATTCCAGCTTCCGCTAGTCAACCGCATCATGTTCTCGATGCAGCGCCGCAAAAAGCTCCCCGAACTGCCCAAGGGCCTCCATACCCGTCACAATGGTGGGGCTAACAGTGCCCTTGGG < 5:47191/148‑1 GGGCGGTGTCTATTCCATCCTCAGCCAAGAATTCCAGCTTCCGCTAGTCAACCGCATCATGTTCTCGATGCAGCGCCGCAAAAAGCTCCCCGAACTGCCCAAGGGCCTCCATACCCGTCACAATGGTGGGGCTAACAGTGCCCTTGG < 2:233777/147‑1 CCTCCATACCCGTCACAATGGTGGGGCTAACAGTGCCCTTGGGCAGTTCGGGGAGCTTTTTGCGGCGCTGCATCGAGAACATGATGCGGTTGACTAGCGGAAGCTGGAATTCTTGGCTGAGGATGGAATAGACACCGCCCAAGGCGGCT > 1:254803/1‑149 GTGACAGCCGAAGAAATCCGGTACATGGCCGGGGAATTGGAAGCCGCCTTGGGCGGTGTCTATTCCATCCTCAGCCAAGAATTCCAGCTTCCGCTAGTCAACCGCATCATGTTCTCGATGCAGCGCCGCAAAAAGCTCCCCGAACTGCCCAAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2601622‑2601777‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaagggcCTCCATACCCGTCACAATGGTGGGGCTAACAGTGCCCTTGGGCAGTTCGGGGAGCTTTTTGCGGCGCTGCATCGAGAACATGATGCGGTTGACTAGCGGAAGCTGGAATTCTTGGCTGAGGATGGAATAGACACCGCCCAAGGCGGCT < NC_002947/2601810‑2601663 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |