| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3233134 = | 55 (0.770) | 5 (0.070) | 5/254 | NT | 9.7% | coding (322/948 nt) | GbpR | galactose‑binding protein regulator |
| ? | NC_002947 | 3233196 = | 41 (0.600) | coding (384/948 nt) | GbpR | galactose‑binding protein regulator | |||||
GCGTAGCAAGGCCGGCAGCAAGGTGTCGCTGGTGCCCACCTCCAGCGAGATACGCACCTTGGGCTGGTCGCGCTTGTAGGCCAGCACCGCCTTGGTCAGCACGCCTGGTACCGGGCCCATGACGCTGCCCACCCGCACCAGGC‑‑‑‑‑‑‑CCAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3233283‑3233134‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaaggcGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATATGGTGGTGGGGCGCCTGCCGGACCAGAGTGACAGCCAGGAAC > NC_002947/3233196‑3233338 GCGTAGCAAGGCCGGCAGCAAGGTGTCGCTGGTGCCCACCTCCAGCGAGATACGCACCTTGGGCTGGTCGCGCTTGTAGGCCAGCACCGCCTTGGTCAGCACGCCTGGTACCGGGCCCATGACGCTGCCCACCCGCACCAGGC‑‑‑‑‑‑‑CCAAGG > 7:53242/1‑149 GTAGGCCAGCACCGCCTTGGTCAGCACGCCTGGTACCGGGCCCATGACGCTGCCCACCCGCACCAGGC‑‑‑‑‑‑‑CCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGT > 5:397048/1‑126 GTAGGCCAGCACCGCCTTGGTCAGCACGCCTGGTACCGGGCCCATGACGCTGCCCACCCGCACCAGGC‑‑‑‑‑‑‑CCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGT < 6:397048/126‑1 CGCCTTGGTCAGCACGCCTGGTACCGGGCCCATGACGCTGCCCACCCGCACCAGGC‑‑‑‑‑‑‑CCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTAC > 7:105376/1‑149 AGCACGCCTGGTACCGGGCCCATGACGCTGCCCACCCGCACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCG > 1:55804/1‑149 CACCCGCACCAGGC‑‑‑‑‑‑‑CCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATATGGTGGTGGGGCGCCTGCCGGACCAGA < 8:105376/149‑1 CAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATATGGTGGTGGGGCGCCTGCCGGACCAGAGTGACAGCCAGGAAC < 7:185256/149‑1 CAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATATGGTGGTGGGGCGCCTGCCGGACCAGAGTGACAGCCAGGAAC > 8:333872/1‑149 GCGTAGCAAGGCCGGCAGCAAGGTGTCGCTGGTGCCCACCTCCAGCGAGATACGCACCTTGGGCTGGTCGCGCTTGTAGGCCAGCACCGCCTTGGTCAGCACGCCTGGTACCGGGCCCATGACGCTGCCCACCCGCACCAGGC‑‑‑‑‑‑‑CCAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3233283‑3233134‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaaggcGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATATGGTGGTGGGGCGCCTGCCGGACCAGAGTGACAGCCAGGAAC > NC_002947/3233196‑3233338 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |