New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3233134 =	55 (0.770)	5 (0.070)	5/254	NT	9.7%	coding (322/948 nt)	GbpR	galactose‑binding protein regulator
	?	NC_002947	3233196 =	41 (0.600)					coding (384/948 nt)	GbpR	galactose‑binding protein regulator

ATGGCGAGGTGATGATTCGCTATGCGCAAAACGCATTGCATGAGTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATATGGTGGTGGGGCGCCTGCCGGACCAGAGTGACAGCCAGGAAC  >  NC_002947/3233048‑3233338                                                                                                                                                     |                                                                                                                                               gtagcaaggccggcagcaaggtgtcgctggtgcccacctccagcgagatacgcaccttgggctggtcgcgcttgtaggccagcaccGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCg                                                                                                                                                >  7:105376‑M1/87‑149 (MQ=255)  tGGCGAGGTGATGATTCGCTATGCGCAAAACGCATTGCATGAGTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCg                                                                                                                                                <  8:25791/148‑1 (MQ=255)    gCGAGGTGATGATTCGCTATGCGCAAAACGCATTGCATGAGTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTg                                                                                                                                             <  4:410637/149‑1 (MQ=255)    gCGAGGTGATGATTCGCTATGCGCAAAACGCATTGCATGAGTTCGATCATGCCCAGGCACAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTg                                                                                                                                             <  7:177009/149‑1 (MQ=255)         gTGATGATTCGCTATGCGCGAAACGCATTGCATGAGTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGc                                                                                                                                        >  2:65854/1‑149 (MQ=255)         gTGATGATTCGCTATGCGCGAAACGCATTGCATGAGTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGc                                                                                                                                        <  1:65854/149‑1 (MQ=255)               atTCGCTATGCGCAAAACGCATTGCATGAGTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACaa                                                                                                                                  <  6:389293/149‑1 (MQ=255)                 tCGCTATGCGCAAAACGCATTGCATGAGTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAgc                                                                                                                                >  8:278412/1‑149 (MQ=255)                       tGCGCAAAACGCATTGCATGAGTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGAc                                                                                                                           <  7:317260/148‑1 (MQ=255)                        gcgcAAAACGCATTGCATGAGTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGcgcg                                                                                                                             <  7:203016/145‑1 (MQ=255)                        gcgcAAAACGCATTGCATGAGTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGcgcg                                                                                                                             >  8:203016/1‑145 (MQ=255)                            aaaaCGCATTGCATGAGTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGccc                                                                                                                     <  2:319262/149‑1 (MQ=255)                            aaaaCGCATTGCATGAGTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGcc                                                                                                                      >  1:283339/1‑148 (MQ=255)                             aaaCGCATTGCATGAGTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGccc                                                                                                                     >  4:150156/1‑148 (MQ=255)                                 gCATTGCATGAGTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGTGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGt                                                                                                                <  2:379324/149‑1 (MQ=255)                                 gCATTGCATGAGTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGt                                                                                                                >  3:72162/1‑149 (MQ=255)                                    ttGCATGAGTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCg                                                                                                             <  2:283339/149‑1 (MQ=255)                                    acctccagcgagatacgcaccttgggctggtcgcgcttgtaggccagcaccGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTAc                                                                                                                                    <  6:397048‑M1/75‑1 (MQ=255)                                    acctccagcgagatacgcaccttgggctggtcgcgcttgtaggccagcaccGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTAc                                                                                                                                    >  5:397048‑M1/52‑126 (MQ=255)                                       cATGAGTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTAt                                                                                                          <  6:21985/149‑1 (MQ=255)                                            gTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGGGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGc                                                                                                     <  5:139787/149‑1 (MQ=255)                                                gATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTgg                                                                                                  <  1:323058/148‑1 (MQ=255)                                                  tCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAgg                                                                                               >  5:2084/1‑149 (MQ=255)                                                        ccAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTg                                                                                             <  4:131439/145‑1 (MQ=255)                                                        ccAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTg                                                                                             >  3:131439/1‑145 (MQ=255)                                                            gcgcAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAg                                                                                     >  5:409721/1‑149 (MQ=255)                                                            gcgcAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAg                                                                                     >  3:149316/1‑149 (MQ=255)                                                             cgcAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGc                                                                                    <  6:418468/149‑1 (MQ=255)                                                             cgcAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGGACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGc                                                                                    <  7:389632/149‑1 (MQ=255)                                                                  aTCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGacac                                                                               <  2:64612/149‑1 (MQ=255)                                                                          gtaggccagcaccgccttggtcagcacgcctggtaccgggcccatgacgctgcccacccgcaccaggcccaaggcGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGt                                                                                              >  5:397048‑M2/76‑126 (MQ=255)                                                                          gtaggccagcaccgccttggtcagcacgcctggtaccgggcccatgacgctgcccacccgcaccaggcccaaggcGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGt                                                                                              <  6:397048‑M2/51‑1 (MQ=255)                                                                           cTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGcc                                                                      <  7:278412/149‑1 (MQ=255)                                                                              gcgcgcGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGc                                                                   >  5:185510/1‑149 (MQ=255)                                                                                 cgcgGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCtt                                                                <  3:150156/149‑1 (MQ=255)                                                                                      cgccttggtcagcacgcctggtaccgggcccatgacgctgcccacccgcaccaggcccaaggcGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTAc                                                           >  7:105376‑M2/64‑149 (MQ=255)                                                                                        CCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTAcgc                                                         >  7:53242‑M1/1‑149 (MQ=255)                                                                                         agcacgcctggtaccgggcccatgacgctgcccacccgcaccaggcgtgctgaccaaggcGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTAcgcg                                                        >  1:55804‑M2/61‑149 (MQ=255)                                                                                                  ggTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACGTTGCTGCCGGCCTTGCTCCGCGGTGAGTTc                                                >  8:185256/1‑148 (MQ=255)                                                                                                   gTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGTGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTc                                                <  5:385812/147‑1 (MQ=255)                                                                                                   gTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGa                                              <  6:2084/149‑1 (MQ=255)                                                                                                    tGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGat                                             <  8:42140/149‑1 (MQ=255)                                                                                                       gggTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGat                                             >  2:106942/1‑146 (MQ=255)                                                                                                       gggTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGat                                             <  1:106942/146‑1 (MQ=255)                                                                                                          tGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATAtggtg                                       >  5:80477/1‑149 (MQ=255)                                                                                                            ggCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATAtggtggt                                     <  3:171743/149‑1 (MQ=255)                                                                                                                            cGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATATGGTGGTGGGGCGTCTGCCGGAc                     <  4:323579/149‑1 (MQ=255)                                                                                                                                cacccgcaccaggcccaaggcGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATATGGTGGTGGGGCGCCTGCCGGACCaga                 <  8:105376‑M2/128‑1 (MQ=255)                                                                                                                                 ccAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATATGGTGGTGGGGCGCCTGCCGGACCagag                <  6:80477/149‑1 (MQ=255)                                                                                                                                   aGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATATGGTGGTGGGGCGCCTGCCGGACCAGAGt               >  6:430166/1‑148 (MQ=255)                                                                                                                                   aGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATATGGTGGTGGGGCGCCTGCCGGACCAGAGTg              >  6:424256/1‑149 (MQ=255)                                                                                                                                    ggCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATATGGTGGTGGGGCGCCTGCCGGACCAGAGTGa             <  5:430166/149‑1 (MQ=255)                                                                                                                                    ggCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATATGGTGGTGGGGCGCCTGCCGGACCAGAGTGa             <  5:424256/149‑1 (MQ=255)                                                                                                                                             aCCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATATGGTGGTGGGGCGCCTGCCGGACCAGAGTGACAGCCAgg     <  4:118636/148‑1 (MQ=255)                                                                                                                                               caaggcGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATATGGTGGTGGGGCGCCTGCCGGACCAGAGTGACAGCCAGGAAc  <  7:185256‑M2/143‑1 (MQ=255)                                                                                                                                               caaggcGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATATGGTGGTGGGGCGCCTGCCGGACCAGAGTGACAGCCAGGAAc  >  8:333872‑M2/7‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                               ATGGCGAGGTGATGATTCGCTATGCGCAAAACGCATTGCATGAGTTCGATCATGCCCAGGCGCAAATCGCCGAACTGGCGCGCGGAGCCTTGGGCCTGGTGCGGGTGGGCAGCGTCATGGGCCCGGTACCAGGCGTGCTGACCAAGGCGGTGCTGGCCTACAAGCGCGACCAGCCCAAGGTGCGTATCTCGCTGGAGGTGGGCACCAGCGACACCTTGCTGCCGGCCTTGCTACGCGGTGATTTCGATATGGTGGTGGGGCGCCTGCCGGACCAGAGTGACAGCCAGGAAC  >  NC_002947/3233048‑3233338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.